Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2230 118 9e-22 seq3420 107 2e-18 seq2330 98.7 8e-16 seq534 93.3 4e-14 seq623 87.8 2e-12 >seq2230 Length=15872 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 31 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 90 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 91 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 150 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 151 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 210 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 211 ATCCAAAAAG 220 >seq3420 Length=11708 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || |||| || ||||| | || | ||||| || | | Sbjct 69 ATGCAAATTTTTGTTAAGACGCTAACTGGGAAAACTATTACGTTGGAAGTTGAGTCTTCA 128 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| || ||||| || ||||| Sbjct 129 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 188 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| | || || ||||| | | ||||||||| Sbjct 189 CAACGTCTGATCTTCGCTGGTAAACAACTGGAAGACGGTCGCACGCTTGCGGATTACAAC 248 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| |||||||| || Sbjct 249 ATTCAGAAAGAATCTAC 265 >seq2330 Length=206 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || ||||| | ||||| || | || Sbjct 206 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCC 147 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 146 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 87 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 86 CAACGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 27 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 26 ATCCAGAAAGAATCAAC 10 >seq534 Length=9540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 1100/1762 (62%), Gaps = 98/1762 (6%) Strand=Plus/Plus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 4063 AATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 4122 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 4123 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGGCGGAAT 4179 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 4180 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 4237 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 4238 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 4297 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 4298 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 4357 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 4358 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 4415 Query 129263 AACCGTG-CTGTTTAATGTCtttttttAATTGTGTCCAGTCCCA-CATC--GATGTGGGT 129318 ||||| | || | | | ||| || || |||| ||||| | | || ||| Sbjct 4416 TTCCGTGAGTAGCTACT-TGCTCTTTCAACTGCTTCCAATCCCATCGACCGGAATCGGGA 4474 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACC----CAAACTGGCGGGACTGGAAAAGTA 129374 || | ||||| || |||| || ||||| | |||||| | | | | || Sbjct 4475 ATGACCTGCCACATATCAAATTGAAAGATACCTCGACTAACTGGTGATCCAGCA----TA 4530 Query 129375 GGAATCGTGCACGCCGTAAGCTTTTGCCAATTC---GCAACTCGCTTCCAATGCGCCAAA 129431 | |||| | ||| | ||||||||| | || ||||||| || | || Sbjct 4531 GCTCTCGTACGGTCCGAGTTCCCGTGCCAATTCCATGGAA---GCTTCCATCGCCGCGAA 4587 Query 129432 ATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCAT 129491 ||| || ||||| ||||| |||| | | | || | |||||| | || | Sbjct 4588 ATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAAG 4647 Query 129492 ACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 || || || ||| || ||||| | |||||||| || | || || ||||||||| Sbjct 4648 ACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCG 4707 Query 129552 TCTATTGGATTTTTGTGCCGACAACAA-GGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 |||| ||||| | || || ||||| || |||| || || |||||||| | Sbjct 4708 CTGATTGCTCACTTGTG-CTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 4766 Query 129611 AATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670 ||| || || ||||| || | | | ||| ||| |||||| | | | | | Sbjct 4767 GATTTTTCGTAACGATTTTTGTGATTTCGTATAA-TTTTGCAAATTGAAAT-TCTTTC-- 4822 Query 129671 CGATGTCGACAAATTGATTGACA--CAAATCGAGGCCAAATTGCAGACGGCACTTTCGTT 129728 || | ||||||| |||||| || || ||||||||||| || || ||| || Sbjct 4823 TGA--TACACAAATT--TTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTT 4878 Query 129729 TTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 ||| |||||||| ||||| ||| | ||| || | |||||| || | || Sbjct 4879 GGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATT 4938 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || ||||| ||| || ||||| |||||||| | ||| |||||||| || || || Sbjct 4939 CTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTC 4998 Query 129849 GACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGA---TCTGTCTTACAAA 129905 | || | || | ||||| |||| | | || |||| ||| || ||| Sbjct 4999 AATCTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAAT 5058 Query 129906 TTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATT--CTGAGCCGTGT---ACG 129960 || | | |||||| ||| | ||||||| || || ||| | Sbjct 5059 GTTTTGAGA---CTCGTACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTCTCATA 5115 Query 129961 GTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACT 130020 |||| | | | || | |||||| | |||||||| | | |||| || Sbjct 5116 AAGTCGTGGAGCCTCGTT-----CGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACA 5170 Query 130021 CGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCC 130080 ||||||||||||| |||||| | ||| || || || ||||||||||| || || || Sbjct 5171 CGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGC---TCGATGG 5227 Query 130081 TCGGCA--CCCATG----TTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 || ||||| |||||| ||||| || || || | || || |||||||| Sbjct 5228 AGTTCATTTCCATGATTCTTACGT---AGTTCCAGAAACTCAAAGATATCCGCGTGCCAG 5284 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGC 130191 || || | ||||||||| | | || ||||| || || ||||| ||||||| || Sbjct 5285 GGCTCTAGATAAATTGCAAAAGACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGA 5344 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | | ||| | || || | ||||| | | ||| || | | || || || | Sbjct 5345 GCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCG 5404 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 ||| ||||| | |||| || || || | || || ||||| | | Sbjct 5405 CGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCAC 5464 Query 130312 TTTGATATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTA 130371 ||||| || |||| || | ||||| || |||||||| ||||| || |||| Sbjct 5465 TTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGC 5524 Query 130372 ATGTTTAGGAGGAAACACGAGGCCAATTGGGCGTAACATGAT-CCGCTGGCAAACAAAGT 130430 ||| || || |||||||| | ||||||| | | | |||| ||| | || Sbjct 5525 ATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAA-AGCGT 5583 Query 130431 TGGACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGTTTCAAAAACGTTTTC 130490 ||| ||||||| ||| | | || |||| ||| | |||||||| |||||| || Sbjct 5584 CGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCGTC 5643 Query 130491 AATGCAATCGTCGGTGTCGTTGCCGTGTATGGTTAGAGCCACACGCATGTACATATGTTG 130550 | ||| | || || ||||||| | |||||| ||||| ||||||||| Sbjct 5644 CA---AAT------TCTCTTT---GTGTATGCCGACAGCCACTCGCATTATCATATGTTG 5691 Query 130551 AATGCGCTCCGCCAC-TTTCCCCTCAATCGTTTTCA--AGTAACCATTT-TCGAGAGTTT 130606 ||| || ||| ||||| ||| || || || || |||| || ||||||| Sbjct 5692 TGGGCGTTCACACACTTTTCCATTCACACG----CAACAGATACGATTTCTCCAGAGTTT 5747 Query 130607 TAAATCCAAAATATTTGTAATC 130628 |||| |||||||| | |||||| Sbjct 5748 TAAAGCCAAAATAGTCGTAATC 5769 >seq623 Length=41192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| || || ||||| ||||| || ||||| || ||||| || || ||| || Sbjct 12912 GGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCGA 12971 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | | |||||||||||||| |||||| ||| ||||| | ||| | ||||| ||| Sbjct 12972 ACATTAGCGGATTACAACATTCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACGC 13031 Query 22441 GGAGGT 22446 || ||| Sbjct 13032 GGTGGT 13037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419690867057335