Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq337 86.0 1e-11 seq1360 84.2 4e-11 >seq337 Length=89777 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| ||| | ||||| ||||| | || |||||||| | |||||| || ||| | Sbjct 62738 GGATCTATGTAATTGTGAGTTCTCTTTGGCGTATGGTGGTATGATTCTACTGAACAACGC 62797 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| | | ||| | || | || ||||||||| ||||| |||||| ||||| Sbjct 62798 CCGGTTGCGTTTGAAGAGAGGACATCGTTATGGTCTCTGTGGTCCAAATGGATGCGGTAA 62857 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTC---CTAACGCATC 279526 || || ||| | ||||| || ||||| || ||||||||||||| |||| | Sbjct 62858 ATCAACGCTGATGAGAGCCATCGCTAACGGCCAACTGGAAGGATTTCCGTCTAA---AGA 62914 Query 279527 TGAGGTAAGGACAGTGTATGTAGAGCA 279553 |||| ||| ||| |||| ||| || || Sbjct 62915 TGAGCTAAAGACTGTGTTTGTCGAACA 62941 >seq1360 Length=21707 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCACAT 142570 ||||||||||||||||||||| | || |||| | |||||||||||||||||||||||| Sbjct 85 TAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCCCCACGG 144 Query 142571 CGGGCA 142576 ||||| Sbjct 145 AGGGCA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027741205074819