Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2230 159 6e-34 seq2330 147 4e-30 seq3420 145 1e-29 seq2614 136 7e-27 seq3284 105 1e-17 seq3475 91.5 3e-13 seq623 89.7 9e-13 >seq2230 Length=15872 Score = 159 bits (176), Expect = 6e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| ||||| | ||| || | || || || || || || || ||||| | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||||||||| ||||| |||||||||||||||||||| ||||| || | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| ||||| | |||||| || || | ||||| ||||| || ||||| |||||||||| Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 40 AAATCTGCATT 30 >seq2330 Length=206 Score = 147 bits (162), Expect = 4e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68256 AAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAAC 68315 ||||| | ||| || ||||| |||||||| ||||| | || || | || ||||||| Sbjct 1 AAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGT 60 Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || ||||| || || | ||| || || || ||||| ||||| |||||||||||| Sbjct 61 TGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATC 120 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || ||||| || ||||| ||||| | || || |||||||| |||||||| ||||| Sbjct 121 TTGGCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCA 180 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || |||||||| Sbjct 181 GTAAGCGTTTTCACAAAAATCTGCAT 206 >seq3420 Length=11708 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||| || ||||| || ||||| || ||||| ||||| | Sbjct 295 CCACCACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCA 236 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || ||||| || || | ||| || || || ||| Sbjct 235 AGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 176 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||| || ||||| ||||||| || || ||| Sbjct 175 ATTCCTTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 116 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || ||||| || || || ||||| || || || |||||| Sbjct 115 TCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2614 Length=9630 Score = 136 bits (150), Expect = 7e-27 Identities = 256/371 (69%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||||| || | || ||| | ||| | |||| ||||||| |||||||||||| | Sbjct 7974 ACAAAATCTTGAGGATCATTATGCTGCATCATTCTCCACATACATTCGACATAGTCTCTT 8033 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 ||||| ||||| || || || || |||| || || || | ||||| | || | || Sbjct 8034 GCATGACCCCAGTCTCGTTTAGCATCCAAATTTCCAAGATAGAGGCAATCTTGATACCCT 8093 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | |||| ||| |||| || || || || |||||||| || || || | Sbjct 8094 TCATTGATGCGTACAACCGCGCGGGTAATCTTGCGAGTCACGAATGTTAGCCCCCGGCGT 8153 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 || |||||||| || || | ||| || || ||| || || || |||||| || | ||| Sbjct 8154 GGACTCTCGTGATTAAATAAGATTCCATT-CACTGCAAATATTTTATATGCTTCTCTGTA 8212 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 || ||||||| ||| |||||||| ||||||||| |||||||||| || || | || Sbjct 8213 ATTAACGACCGACCAATATGCAAATTGCTTTGCAACACCGTACGGAGATCGCGGGTAAAA 8272 Query 268522 GGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATG 268580 |||| || || ||||| || ||||||| | || || ||||||| || || | Sbjct 8273 AACCGTC-TGTTCATTTTGTGGCGTTTCTCGAGCGTTCCCGTAGAGCTCACTCGTGGAAG 8331 Query 268581 CTTGGTAGAAC 268591 |||| || ||| Sbjct 8332 CTTGATAAAAC 8342 >seq3284 Length=77587 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | || || ||||| || || || | ||||||||| || ||||| |||||| Sbjct 66907 CCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCC 66848 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||| |||||||||||||| | || Sbjct 66847 TTGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTA 66788 Query 68424 ATGGTTTTTCC 68434 || |||||||| Sbjct 66787 ATTGTTTTTCC 66777 >seq3475 Length=17365 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 176268 TCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTA 176327 || || || || |||||||||| |||||||| || |||| |||| |||||||||| Sbjct 9867 TCTTTTCCACCTTGAAGGCGGGTTCCGAATTGACCTGAAGGATACAGCATATTGATGTTA 9926 Query 176328 TTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCG 176387 || ||||| || ||||| || ||||| || || | || || || ||||| || Sbjct 9927 TTGGAACCAACATAGTCCTGCGCCATGTTAACAATAGTAGAGTGCAGCGATGCCTCACCA 9986 Query 176388 TGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGT 176447 || ||||| | | | |||||| |||||||| | ||| || ||||| ||||| ||| Sbjct 9987 TGATGATACGCTGTATGCTCACTACAATATCCGGCCAGCTGTGCTACTTTCATTTCCTGT 10046 >seq623 Length=41192 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||||||||| || ||||| || || || || || || Sbjct 12861 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 12802 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | |||||||| || |||||||| Sbjct 12801 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 12755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921538774287480