Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2330 132 4e-26 seq3420 129 5e-25 seq623 102 7e-17 seq2230 100 2e-16 >seq2330 Length=206 Score = 132 bits (146), Expect = 4e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114177 AAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGT 114236 || || | ||| |||||||| || ||||||||||| | |||||| ||||| ||| Sbjct 1 AAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGT 60 Query 114237 TGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATC 114296 |||||||||||| |||| ||||| || || || |||||||| ||||||||||| |||| Sbjct 61 TGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATC 120 Query 114297 TTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCG 114356 || |||| | || | ||||||| || || || |||| || | || || || Sbjct 121 TTGGCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCA 180 Query 114357 GTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| |||||||||||||| Sbjct 181 GTAAGCGTTTTCACAAAAATCTGCAT 206 >seq3420 Length=11708 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| || | | || | ||| | |||||||||||| |||||||||||||| Sbjct 297 TACCACCACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCG 238 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || ||| ||||| ||||||||||||||| |||| ||||| || || || |||| Sbjct 237 CAAGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAG 178 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| ||||| |||||| |||| | || | ||||| | || || | Sbjct 177 GAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAA 118 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | ||||| || || || || || |||||||| ||||| Sbjct 117 CTTCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCAT 69 >seq623 Length=41192 Score = 102 bits (112), Expect = 7e-17 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| || |||| || | ||| | ||||| ||| |||||| |||||||||||||| || Sbjct 13037 ACCACCGCGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGC 12978 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || ||| |||||| | |||||| ||||| | |||||||||||||||||||| | Sbjct 12977 TAAT-GTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGG 12919 Query 114274 GAATGCCT 114281 |||| ||| Sbjct 12918 GAATACCT 12911 >seq2230 Length=15872 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 ||||||| ||||||||||| | || || || || | |||||| || ||| | | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | |||||||||||| |||||||| ||||| ||||| |||||| || | | | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | ||||||| |||||||| || | || | ||||| ||||| || || || || | Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 114373 AAATCTGCATGGCTTAATTA 114392 |||||||||| ||||| || Sbjct 40 AAATCTGCAT-TCTTAAGTA 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420097231103508