Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3420 116 3e-21 seq2230 109 4e-19 seq2330 107 1e-18 >seq3420 Length=11708 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| ||||| ||||| || ||||||||||| || | | ||||||| | ||| Sbjct 272 ATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGACCGTCTTCCAGTTG 213 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | |||| ||| || || || ||||||||||||||||| ||| || Sbjct 212 TTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 153 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | |||||| | || || || || | || || || || ||||| ||||| || || Sbjct 152 GGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAACGTAATAGTTTTCCCAGT 93 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 92 TAGCGTCTTAACAAAAATTTGCAT 69 >seq2230 Length=15872 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 ||||||| ||||||||||| ||| ||| |||| || |||||||| || ||| | | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 ||||||||||||||||| ||||||||||||||||| ||| || || ||| | | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || || ||| ||| || || | || || ||||| || || || || || || | Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 15167 AAATTTGCAT 15176 |||| ||||| Sbjct 40 AAATCTGCAT 31 >seq2330 Length=206 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || ||||| || ||||||||||| ||| | | ||||||||| |||||| ||| Sbjct 10 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCA 69 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 ||| | |||| ||| || || || ||||||||||| ||||| ||| ||| ||| Sbjct 70 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 129 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| | || || || ||| | || || || || || ||||| || || || || ||| Sbjct 130 ACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 189 Query 15160 TTTACAAAAATTTGCAT 15176 || |||||||| ||||| Sbjct 190 TTCACAAAAATCTGCAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357360381864815