Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1573 114 2e-20 seq534 95.1 1e-14 >seq1573 Length=148509 Score = 114 bits (126), Expect = 2e-20 Identities = 267/398 (67%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 118522 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 118463 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 118462 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 118403 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 118402 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 118343 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 127770 || ||||| || || | || |||| || | ||||| || || | | || || Sbjct 118342 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 118284 Query 127771 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT 127830 ||| | ||||||||||||||| |||| || | | ||||| ||| ||| | | Sbjct 118283 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 118224 Query 127831 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| | Sbjct 118223 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCACTG 118166 Query 127889 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATC 127926 ||||| | || ||| ||| ||||||||||| Sbjct 118165 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 118128 >seq534 Length=9540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 370/574 (64%), Gaps = 11/574 (2%) Strand=Plus/Plus Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTC--TTCACCCACAGCCTCTGAGAGCCCTGGT 116712 |||||||||| | || | || ||||| || ||| |||| | ||| | || | ||| Sbjct 5068 CTCGTACTTTTTATATAACGCATCAAATTCGCTTC-CCCAT-GTCTCATAAAGTCGTGGA 5125 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| | |||||||| | | ||||| || || || || ||||| || || Sbjct 5126 GCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGA 5185 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || |||||||| || || | || | ||| ||| ||| ||||| || ||||| Sbjct 5186 TCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTC 5245 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 ||| | |||| ||| || | ||||||||||||||| || || || || | || | Sbjct 5246 TTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAA 5305 Query 116893 GACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGA 116949 ||||| || || | ||| | || | || || | || || | || || || ||| Sbjct 5306 GACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGA 5365 Query 116950 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT 117009 |||||||||| || |||| || ||||| ||||| |||||| | ||| ||| Sbjct 5366 AGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAG 5425 Query 117010 CTGACATCGTGGATGTGC--ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACT 117067 | || || |||| | | | |||||||| || ||||||||||| || || || | Sbjct 5426 C-GA-ATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATT 5483 Query 117068 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 117127 | || || |||| || || ||||| || ||| | | | | | || || || Sbjct 5484 GTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACG 5543 Query 117128 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 117187 ||| | ||| || | || || || || ||||| || || || || || || | || | Sbjct 5544 ACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGA 5603 Query 117188 TACCTTGGGACATCTTATCGTAGGTCTCCAAGAC 117221 ||| ||||| | || || || ||||| || Sbjct 5604 ACTTTTGTGACATGTGTTCATACGTTTCCAAAAC 5637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613451531890440