Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq534 172 6e-38 seq1573 140 4e-28 >seq534 Length=9540 Score = 172 bits (190), Expect = 6e-38 Identities = 681/1054 (65%), Gaps = 38/1054 (4%) Strand=Plus/Plus Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--ACTTTCGC 106336 ||| || ||||||||||| || | ||||| |||| |||||| ||| |||| || Sbjct 4666 ATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGC 4725 Query 106337 G-CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 106395 ||| || |||||| |||| ||||||| | ||| |||||||| ||||| || Sbjct 4726 TTCAGG---AATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGAT 4782 Query 106396 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 106455 ||||||||||| | | |||| || | | ||| | | | ||| || ||| | || Sbjct 4783 TTTTGTGATTTCGTATAATTTTGCAAATTGAAA--TTC---TTTCTG-ATACACAAATTT 4836 Query 106456 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 106515 || | ||||| || ||||||||||| || ||| || | |||| |||||| | Sbjct 4837 TGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGAT 4896 Query 106516 AATTTCTGTACACAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 106572 ||||| || | ||| || | ||| || || | ||||| || || || Sbjct 4897 GATTTCACAGCAGAGATTGCTTGATCG---AATGGTTCCAAGATTCTGCTGATTGGATTT 4953 Query 106573 TTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 4954 ACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAA 5013 Query 106633 AATTGCCTTCCACACATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGCCTCG 106690 ||| || ||||| | |||| ||| | | || ||| | | |||| Sbjct 5014 AATGGCAAACCACAATTGCTGGGCTTTGACAGT--CTTTCGGGCAATGTTTTGAGACTCG 5071 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTC-CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 |||||| | || | || ||||| || || |||| | || | || | ||| |||| Sbjct 5072 TACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTC-TCATAAAGTCGTGGAGCCTC 5130 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || |||||||| | | ||||| || || || || ||||| || || || || Sbjct 5131 GTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGG 5190 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||| || | |||| | ||||| | ||| ||| | || || || || Sbjct 5191 GATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACG 5250 Query 106870 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 106929 || || || ||||| | ||||||||||||||| ||||| ||||| | ||| | ||| || Sbjct 5251 TAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCC 5310 Query 106930 CTTTCGACGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 106986 || || |||| | ||||| || || || |||||| | || || || |||||||| Sbjct 5311 TTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCAT 5370 Query 106987 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 107046 ||||| ||| |||| || ||||| ||||| |||||| | || ||| | | Sbjct 5371 TGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAAT 5430 Query 107047 ATCATGGATGTGC--ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 || |||| | | | |||||||| |||||||||||||| || |||||| | | Sbjct 5431 AT--TGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTC 5488 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | || || |||| ||| || || || | ||| | || || || || Sbjct 5489 AGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGAT 5548 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATA 107221 | || |||| || || || |||||||| || || || ||||| || || |||| | Sbjct 5549 AATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTT- 5607 Query 107222 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 ||| ||||| | || || || ||||| || | || | | || ||| |||||| Sbjct 5608 --TTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCG 5665 Query 107282 ATGGCCACACGCATAAACATGTATTG-GGGTGTT 107314 | ||||| ||||| | ||| | ||| ||| ||| Sbjct 5666 ACAGCCACTCGCATTATCATATGTTGTGGGCGTT 5699 >seq1573 Length=148509 Score = 140 bits (154), Expect = 4e-28 Identities = 303/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || ||||| || || || |||||||| ||||| || || ||||| | || Sbjct 118522 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 118463 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || ||||||| |||| | |||| ||||||||| |||||||| ||||| || || || | Sbjct 118462 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 118403 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 ||||| || | | | || || || ||| | |||||| || ||||||||| ||| Sbjct 118402 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 118343 Query 117466 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 117525 |||| || || || || || || | |||| || || | ||| |||| ||| Sbjct 118342 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGCTGTTTT 118283 Query 117526 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 117585 |||| | ||| || |||||| | ||||||||| ||||| ||| || | || Sbjct 118282 TCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTT 118223 Query 117586 TCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCG 117643 || ||| ||| |||| || |||| || | || |||||| ||||| || ||| | | Sbjct 118222 TC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CTG 118166 Query 117644 CA-AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 117702 | ||||| | || ||| ||| ||||||||||| | |||||||| |||| Sbjct 118165 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 118106 Query 117703 ATGTACTTTATGAATTTCTTTTCATTTTC 117731 | || || || || | ||||||| || Sbjct 118105 ACGTGTTTGATAAAGTGTCTTTCATTGTC 118077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589927266617160