Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2816 201 9e-46 seq293 197 1e-44 seq3420 127 2e-23 seq2451 125 6e-23 seq2235 120 2e-21 seq2330 107 2e-17 seq5467 102 7e-16 seq3284 93.3 3e-13 >seq2816 Length=10603 Score = 201 bits (222), Expect = 9e-46 Identities = 411/603 (68%), Gaps = 17/603 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| ||| | || || || || ||||| ||||| |||||||||| | Sbjct 314 AGCAATTGGTATTGATCTTGGTACAACTTACTCATGTGTGGGTGTCTGGCAAAATGATCG 373 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||||||||| || || ||||| ||| |||| ||||| || || ||| ||||||| Sbjct 374 AGTCGAAATTATTGCTAACGACCAAGGAAACCGAACCACTCCGTCCTACGTTGCTTTCAC 433 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 || ||||||| | | |||||||||| || ||| | || ||||| || || | | Sbjct 434 CGACACTGAACGTCTTATTGGTGATGCCGCTAAAAACCAAGTAGCCA-TG--AACGCAGC 490 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 || || | || || || |||||||| ||||| ||| |||| || | | || || Sbjct 491 AAACACCGTCTTCGACGCCAAACGTTTGATTGGTCGAACTTTTTCGGACCCAATCGTCCA 550 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGG---AAAACCTTATAT 550284 || || |||||||| ||||| ||| | || || | |||| || || | || Sbjct 551 AGCTGACATGAAGCACTGGCCATTCACAGTTCAAAACGGACCTGGCAACAAGCCCTTGAT 610 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTC-ACCAGAACAAATTTCATCTATGG 550343 |||| || | | |||| | || | ||||| ||| ||| ||||||| || |||| Sbjct 611 CGAAGTCAC-CTTTAAGGGTGAAAAGAAAATTTTTCAACCTGAAGAAATTTCCTCAATGG 669 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 | | | || ||| || | || | | || | |||| | | |||| | Sbjct 670 TGCTCGTAAAGATGCGTGAAGTCTCTGAAGCGTACATCGGAAAGCAAGTGAAGAATGCCG 729 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || ||||||||||| || || || || |||||||||||||| ||||| || || Sbjct 730 TCATCACCGTACCAGCATACTTCAACGATTCCCAACGTCAAGCTACCAAAGACGCGGGTG 789 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || || || | || || ||||| || ||||||||||| ||||| ||||| |||| | Sbjct 790 CGATCGCCGGTTTGAACGTGCTTCGAATCATCAATGAACCAACTGCAGCTGCCATTGCGT 849 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAG 550580 | || | || | | || | ||||||| ||||| |||||||| || | |||||| Sbjct 850 ACGGTTTAGAGA---AGAAAGGTCAAGAATGCAATGTGCTCATCTTCGATCTTGGTGGAG 906 Query 550581 GTA 550583 ||| Sbjct 907 GTA 909 >seq293 Length=196708 Score = 197 bits (218), Expect = 1e-44 Identities = 377/546 (69%), Gaps = 17/546 (3%) Strand=Plus/Plus Query 549993 CTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAG 550052 || |||| || ||| | ||||| || || || |||||||| |||||||||| | || Sbjct 108216 CTGTAGGCATTGATCTTGGAACAACGTACTCATGCGTTGGTGTGTGGCAAAATGATCGAG 108275 Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 | || || ||||| |||||||| || || |||| || || || ||||| |||| || | Sbjct 108276 TCGAGATCATTGCGAATGATCAGGGAAATCGAACGACACCTTCGTATGTCGCTTTTACAG 108335 Query 550113 AAACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 | || || | | | | ||||||| ||||| || | |||| || ||| | || || Sbjct 108336 ATACGGAGAGACTGA-TTGGTGACGCAGCGAAGAACCAAGTGGCTATGAATGCAACAAAC 108394 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| |||| || || ||||| || ||||| || ||| || |||| | ||||| || Sbjct 108395 ACTGTTTTCGACGCGAAACGATTGATTGGTCGACGTTGTAGTGATCCTGTGGTTCAAGCT 108454 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTG--GAAAACCTTATATTGA-- 550287 ||||| || |||||||||||| || |||| | | || | | || | ||| Sbjct 108455 GATATCAAACATTGGCCTTTCAAA---GTTACTTCTAGTGAAGGAGACAAGACGATGATT 108511 Query 550288 AGCTACTCAT--GAAGGATCTGTTAAACAAT--TTTC-ACCAGAACAAATTTCATCTATG 550342 | | | || |||| || | | ||| |||| ||| ||| | || || || ||| Sbjct 108512 ACCGTCCAATACAAAGG---TGAAACAAAATCCTTTCGACCGGAAGAGATATCTTCAATG 108568 Query 550343 GTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCA 550402 |||||||| ||||||| | ||| ||| |||||| | ||| |||| || | | || Sbjct 108569 GTTTTAATCAAAATGAGAGAAATTGCCGAAGCTTTTCTCGGTAAAGATGTCAAAAACGCG 108628 Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || |||||||| ||||| ||||||||||| || ||||| || || || || || || Sbjct 108629 GTTATTACTGTACCTGCATACTTTAATGACTCGCAGCGTCAGGCGACCAAGGACGCAGGC 108688 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 ||||| || | ||||| || ||||| || ||||| || ||||| || || | || Sbjct 108689 GCGATTGCAGGGTTAAATGTGCTGCGTATAATTAATGAGCCAACTGCAGCGGCTATCGCG 108748 Query 550523 TATGGA 550528 |||||| Sbjct 108749 TATGGA 108754 Score = 181 bits (200), Expect = 9e-40 Identities = 564/857 (66%), Gaps = 37/857 (4%) Strand=Plus/Plus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||| ||| | ||| | || || ||||||||||||||| |||| || ||||| | |||| Sbjct 108868 TGGTGATACACATTTGGGCGGAGAAGATTTTGATAATCGACTAGTCGATCAT--TTTGTT 108925 Query 551847 GAAGATTTTAAACGAAAAAAC--AAAGTTGATCTATCTACATCTGCCAAAG--CTCTTCG 551902 | || || || |||| | |||| ||| | | ||| | ||| | | ||||| Sbjct 108926 GCCGAATTCAACAGAAAGCATCGAAAG--GATATTACAACAAAT--CAACGTGCACTTCG 108981 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAAC-CA 551961 |||||| | || ||||| || |||| || || | ||||| || ||||| | || Sbjct 108982 CCGTCTACGCACAGCTTGTGAGCGAGCAAAGCGCACCCTTTCTTCATCCGCTCAAGCACA 109041 Query 551962 CTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCA 552021 | |||||| | || || | || |||||| | |||| ||| | | || ||||||| Sbjct 109042 C-ATTGAAATTGACTCGCTGTTCGAGGGAGTGGATTTCAATTCTACAATCACGAGGGCAC 109100 Query 552022 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT 552081 ||| |||||| | ||| | ||| ||| | |||||| |||||||| || | || | Sbjct 109101 GATTCGAAGATTTATGTGCAGATTACTTCCGTCGAACAATGGAACCAGTGGAGAAGGTGT 109160 Query 552082 TAAGAGATTCAAAGATTG--ATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | ||||| || |||| | ||| || || || ||| |||| || || ||||| || Sbjct 109161 TGCGTGATTCTAA-ATTGTCAAAAAGTCAG-GTGCACGAAGTTGTACTCGTGGGTGGCTC 109218 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTA---TTTCAATGGTAAAAAATT 552196 || | ||||||||| | | || | || ||| | |||||| ||||| |||| Sbjct 109219 GACTCGTATTCCTAAAGTGC---AACAGCTATTGTCTGAGTTTTTCAACGGTAAGGAATT 109275 Query 552197 AAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254 || |||| | || || || || || || || | |||||| | | ||||| || Sbjct 109276 G--TGCAAGTCGATAAACCCGGACGAAGCCGTCGCTTTTGGTGCAACTGTACAAGCCGCC 109333 Query 552255 ATTCTTTCTGGACAAACTGAT------GAAAAACTACAAAATATTGTACTTGTAGATGTT 552308 ||| | |||| ||||| ||||| || || || | |||| | |||||| Sbjct 109334 ATTTTAAGTGGA---ACTGAGCAATCCGAAAAGCTGCAGGATCTATTACTATTGGATGTT 109390 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 |||| || || || || | || |||| || || | ||||| | || ||| | Sbjct 109391 GCTCCGCTGTCGCTGGGACTTGAGACAGCGGGTGGAGTGATGACCACACTGATCCCACGT 109450 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||| || | ||| ||||| |||| | ||||| || || ||| || || | Sbjct 109451 AATACCACGCTACCTACGAAAAAGTCTCAAATGTTTTCAACATACCAAGAAAACCAGCCA 109510 Query 552429 GCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTT 552488 | ||| || ||| | ||||| ||||| | | ||| || || || | || Sbjct 109511 GGTGTATGCATACAAGTATTTGAGGGAGAGCGCTCCATGACTCGGGACAACAACCTTCTC 109570 Query 552489 GGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTT 552548 || | || ||| | || || || || || || || || ||||| ||||||||||| Sbjct 109571 GGAAAGTTCAATCTTGACGGAATACCGCCCATGCCGCGCGGTGTACCTCAAATTGAAGTC 109630 Query 552549 ACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAAC 552608 || |||||||||||||||||||||||||||||||| | || || ||||| | |||| Sbjct 109631 ACATTCGATATCGATGCCAATGGAATTTTGAATGTAAGCGCGATCGAGAAATCGACCAAC 109690 Query 552609 AAGAGTAAAAATATTAC 552625 ||| || || ||||| Sbjct 109691 AAGGAAAATAAGATTAC 109707 >seq3420 Length=11708 Score = 127 bits (140), Expect = 2e-23 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || |||||||| ||| |||||| ||| |||||||| || || || | Sbjct 286 AGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGA 227 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||| |||||||| || || || || || | |||||||||||||||||||||||| Sbjct 226 CCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 167 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || |||||||| || ||||| || || || || | || | | ||| | || Sbjct 166 TTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTG-AAGACTCAACTTCCAACGT 108 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||| ||||| || || ||||| ||||||||||| Sbjct 107 AATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCAT 69 >seq2451 Length=10437 Score = 125 bits (138), Expect = 6e-23 Identities = 393/599 (66%), Gaps = 20/599 (3%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||| ||||| ||| | ||||||||||| ||||| ||||| ||| || |||| | Sbjct 3729 AGTTATTGGTATCGATCTGGGAACCACATACTCCTGTGTGGGTGTATGGAAAGATGGCCA 3788 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||| ||| | |||| ||| | || || || |||| || | || || Sbjct 3789 AGTAGAGATCATTGCTAATACTGAAGGAAACCGTACAACGCCTTCTTGGGTCGCATTTAC 3848 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAG-CAAAATATCAAGCCACTGGTAATCCTACCA 550169 || | || | || ||||||| |||| ||||||| ||||| || || || || | Sbjct 3849 CGACAGCGAGCGATTGATTGGTGAGGCAGCCAAAATA-CAAGCGGCTTCCAACCCAACAA 3907 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | ||| |||| || || || ||| | ||||| ||||||||| ||| |||| || Sbjct 3908 ACACTGTTTTCGACGCGAAGCGTATTATTGGTAGAAGTTTTGCCGATGAAGCTGTGCAAC 3967 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGT---TAATGTTTCTGGAAAAC--CTTATAT 550284 ||| |||||| || ||| |||| || || | || |||| ||||| Sbjct 3968 GTGATGCTCAGCATTTCCCATTCAAAATCGTATCGGGTGATGGTGACAAACCACTTATTC 4027 Query 550285 TGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | | | ||| || || ||||| || |||| ||| |||| || ||||||| Sbjct 4028 AGGTGGAATTCAAAAAAGA--GACAAAACAGTTCACACCTGAAGAAATCTCTGCTATGGT 4085 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 | | | ||||||| |||| || || | | || || | | | || || Sbjct 4086 GCTCACGCGAATGAAAGAAACCGCTGAAGCATACCTCGGACAGCCCATCAAACAAGCGGT 4145 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 | || || || || ||||| |||||| ||||||||| | || |||||||| ||| Sbjct 4146 TGTGACCGTCCCTGCGTATTTCAATGACCACCAACGTCAATCGACCAAAGATGCCGGATC 4205 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 |||||||| | | || || || |||||||| || ||||| ||||| | || || Sbjct 4206 GATTGCTGGTTTAGACGTGAAGCGAATCATCAATGAGCCCACTGCAGCTGCCTTGGCGTA 4265 Query 550525 TGGACTTGATA--AAC-----ATAATGAT--CAAGAACT-TAATGTACTCATCTTTGAT 550573 || ||||| | ||| || |||| ||| || |||||| |||||||||||| Sbjct 4266 CGGTCTTGACACCAACGCTGGAT-CTGATGGCAAAGCCTGTAATGTGCTCATCTTTGAT 4323 >seq2235 Length=4594 Score = 120 bits (132), Expect = 2e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | ||||| ||||||||||| || || | ||||||||||| || ||||| Sbjct 2781 GGATGCTGTGGTCACTGTCCCAGCATATTTCAACGATGCTCAACGTCAAGCAACCAAAGA 2840 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||||||| ||| |||||| | | |||| ||||| |||||||| || || |||||||| Sbjct 2841 TGCTGGATCTATCGCTGGATTGACCGTTCAACGTATCATCAATGAGCCAACAGCTGCTGC 2900 Query 550516 ACTTGCATATGGACTTGATAA 550536 |||| |||||| |||| || Sbjct 2901 GATTGCTTATGGAATTGACAA 2921 >seq2330 Length=206 Score = 107 bits (118), Expect = 2e-17 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| || ||||| | | ||||| |||||||| || || || || || | | Sbjct 25 ATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCAGCGAAGATCAGACGT 84 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||||||||||||||||||||| |||||||| || ||||| || || || Sbjct 85 TGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTG 144 Query 563413 TCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || | | ||| | ||| | || || |||||||| ||||| || ||||| || Sbjct 145 TC-GGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTG 203 Query 563472 CAT 563474 ||| Sbjct 204 CAT 206 >seq5467 Length=9666 Score = 102 bits (112), Expect = 7e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| ||||| | || || || | ||||| | || ||| | | ||||| || || Sbjct 6843 GATGTGACTCCATTGTCGCTCGGAATTGAAACGTTAGGCGGTGTGTTCACTAAACTGATA 6784 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 |||| || || |||||| ||||| || | ||||| |||||| | ||| Sbjct 6783 CCGCGAAACACAACCATTCCTACAAAAAAGTCGCAGGTATTCTCTACGGCCGCGGATTCA 6724 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || ||| ||| || || | || | || ||| || || | || |||||| || Sbjct 6723 CAGACTCAAGTTGGTATCAAAGTGTTACAGGGCGAACGAGAAATGGCTGCAGATAACAAA 6664 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || | ||| |||| | ||| ||||| ||||| || ||||| ||||| |||||| Sbjct 6663 TCGCTCGGAAACTTTGATTTGGTAGGAATTCCACCTGCACCGCGTGGTGTACCTCAAATT 6604 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 ||||| | |||||||||||||| ||||| || ||||||| Sbjct 6603 GAAGTGTCGTTCGATATCGATGCGAATGGTATCGTGAATGT 6563 >seq3284 Length=77587 Score = 93.3 bits (102), Expect = 3e-13 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||||||||||||||||||||| || | ||| || ||||||||||||||||| || Sbjct 66904 TCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 66845 Query 563380 TCTTGAATTTT 563390 |||||||| || Sbjct 66844 TCTTGAATCTT 66834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028912111341910