Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq534 167 3e-36 seq1573 140 4e-28 >seq534 Length=9540 Score = 167 bits (184), Expect = 3e-36 Identities = 675/1048 (64%), Gaps = 33/1048 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| | ||| | ||||| || || ||||||| ||| || | | || | || Sbjct 5695 CCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGT 5636 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 75327 ||||| || || || | ||||| ||| | |||| || || ||||| || || || Sbjct 5635 TTTGGAAACGTATGAACACATGTCACAA---AAGTTCTTTACGCATGCAACTCCGACGCT 5579 Query 75328 CTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||||||| || || || |||| || | || || || || | ||| | || Sbjct 5578 TTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGA 5519 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 || || ||| |||| || || | || || | | |||||| || ||||||||||| Sbjct 5518 TGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGC 5459 Query 75448 TGGGGGTATTGGGAT--GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 ||| |||||||| | | | |||| || | | ||| || | |||||| ||| Sbjct 5458 TGGCGGTATTGGCGTCAGTATTTCCA--ATATTCGCTCCACCAACAGTTATATTCGCGGG 5401 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || ||||| || |||| ||| ||||||||||||| || || || | |||||| || Sbjct 5400 ACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGA 5341 Query 75566 TATGTAAATCAAG-CGGGGCGTCGC--AAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || || |||||| ||| | | || || ||||| | || | || | || || ||| Sbjct 5340 TACGTTGATCAAGGCGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGG 5281 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || |||||| | ||||| || || |||| || || || | ||| ||| Sbjct 5280 CACGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACTCCATCGA 5221 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 | ||||| | |||| | || ||||| || || || || ||||| || || || || Sbjct 5220 GCTCGAGATTTGTTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGAC 5161 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGT 75802 ||||| | | |||||||| || |||| ||| | || | || | |||| Sbjct 5160 AACCAAGAATGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGAGACA-TGGGG 5102 Query 75803 GAG-GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || || ||||| || | || | |||||| || | | ||| |||||| Sbjct 5101 AAGCGAATTTGATGCGTTATATAAAAAGTACGAGTCTCAAAACATTGCCCGAAAGACTGT 5042 Query 75862 ACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 |||| | | ||| || ||| | | |||| ||||| ||||| || || Sbjct 5041 CAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAACGCCGTA 4982 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||||||||| || |||||||| || || || ||||| | ||||| || Sbjct 4981 TATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAACCATTC- 4923 Query 75982 GAGCTCAA---ATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | |||| |||| ||| ||||| | |||||| |||| | || ||| || Sbjct 4922 --GATCAAGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAGTGGCAGT 4865 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 ||||||||||| || ||||| | |||| | ||| || | || | | ||| | Sbjct 4864 ATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATCA-GAAAG----AATTTCAA 4810 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || || |||| | | ||||||||||| || ||||| |||||||| ||| | ||||||| Sbjct 4809 TT-TGCAAAATTATACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAATCATTGA 4751 Query 76159 CAGAAATTTTTATCCCGTTGAGACTG-CGCGAAAGT--CTAATATGCGACACAGACCTAT 76215 |||| |||||| || ||| || |||| ||| |||||| |||| || Sbjct 4750 TCTCAATTATTATCCGATT---CCTGAAGCACAAGTGAGCAATCAGCGACATCGACCGAT 4694 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGAT 76243 ||| | || ||||||||||| || ||| Sbjct 4693 TGGAATCGGCGTTCAAGGTCTTGCCGAT 4666 >seq1573 Length=148509 Score = 140 bits (154), Expect = 4e-28 Identities = 303/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || ||||||| | || || || || | |||| |||||||| | ||||||||| Sbjct 118077 GACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATT 118136 Query 64831 GTTTTTGAGAATATCAATAACAATTT-TGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || ||| ||| || | ||||| || | ||| || ||||| |||||| || | Sbjct 118137 GTCAATGAAAATCTCGCCATGAATTTCAGCAG-TGAGGTTCAGATCCCCGAAGCTCGATG 118195 Query 64890 ATTCTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTG 64947 || |||| || |||| ||| ||| |||| | || ||| ||||| |||| Sbjct 118196 CTTTTACGGATTTCAAATTGCAATA--GAAAATATACACTCGGAAGTGTATTCGTTATTG 118253 Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||| | |||||| || ||| | ||||||| |||| ||| | || || |||| Sbjct 118254 ATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACA 118313 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC 65067 | || || || || || || ||||||| ||||||||| || |||||| | | Sbjct 118314 ATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTATGCC 118373 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || || | | | || |||||| || || || ||||| |||||||| ||| Sbjct 118374 TCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCA 118433 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||| |||| | |||| ||||||| || || | ||||| || || ||||| |||||| Sbjct 118434 TTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAAT 118493 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || || || || ||||| || || || Sbjct 118494 GAGCTCATCAGTCGTGATGAAGGACTACA 118522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596515468765920