Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3420 131 3e-25 seq2330 118 2e-21 seq2230 96.9 6e-15 seq3284 89.7 9e-13 >seq3420 Length=11708 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | ||||| |||||||| | |||| ||||| ||| || || || | Sbjct 297 TACCACCACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCG 238 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | ||| | | || || | |||||| || || || || | | || |||||||||| Sbjct 237 CAAGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAG 178 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | |||||||| || ||||| || |||| |||| ||| || || || |||||||||| Sbjct 177 GAATTCCTTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAA 118 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| | || |||||||| || |||||||| || ||||| ||||||||| Sbjct 117 CTTCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2330 Length=206 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| |||||| || || || || | | || ||||||||||| ||||||||||| Sbjct 52 TCTTCTAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTG 111 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| |||| ||| || || ||||||||||||||||| | ||| || Sbjct 112 TCTTGAATCTTGGCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATG 171 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||| ||||| || ||||| Sbjct 172 GTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 206 >seq2230 Length=15872 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || ||||| || | |||||| || ||||| |||||||| || Sbjct 185 TCCTCCAATTGTTTTCCTGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTG 126 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || || ||||| || || || || ||||| || Sbjct 125 TCTTGAATCTTCGCCTTCACATTATCGATCGTGTCGGATGATTCGACCTCAAGAGTGATT 66 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || |||||| Sbjct 65 GTTTTCCCGGTGAGTGTCTTGACGAAAATCTGCATT 30 >seq3284 Length=77587 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||||||||||| | ||||| |||||||| |||||||| || Sbjct 66904 TCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 66845 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || ||| | || | ||| ||| || || | || || ||||| || || || Sbjct 66844 TCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTAATT 66785 Query 193326 GTTTTACCTGTT 193337 ||||| ||| || Sbjct 66784 GTTTTTCCTATT 66773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899572767608880