Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3420 134 1e-26 seq2330 111 1e-19 seq3284 96.9 3e-15 seq534 82.4 7e-11 >seq3420 Length=11708 Score = 134 bits (148), Expect = 1e-26 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| |||||||| || |||||||||||| | ||||| || | | Sbjct 69 ATGCAAATTTTTGTTAAGACGCTAACTGGGAAAACTATTACGTTGGAAGTTGAGTCTTCA 128 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 129 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGATCAG 188 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTATA 24881 |||||| ||||||| || || ||||| ||||| || ||| | | || | ||||| | Sbjct 189 CAACGTCTGATCTTCGCTGGTAAACAACTGGAAGACGGTCG-CACGCTTG-CGGATTACA 246 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||| || ||||| || || || ||||| Sbjct 247 ACATTCAGAAAGAATCTACGCTTCATCTGGTG 278 >seq2330 Length=206 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | |||||||| || || || || || || | ||||| || | || Sbjct 206 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCC 147 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 146 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 87 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| ||||||| || || ||||| || || || | | | | ||||| ||| Sbjct 86 CAACGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 27 Query 24884 ATTCAAAAGGAATCGACACTACACTT 24909 || || || ||||| || | ||||| Sbjct 26 ATCCAGAAAGAATCAACGTTGCACTT 1 >seq3284 Length=77587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 || ||||| ||||| |||||||||||| | | ||||| | || | || || ||| Sbjct 66777 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 66836 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 || |||||||| |||||||| ||||| || ||||||||| | || |||||||| ||||| Sbjct 66837 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 66896 Query 24851 CTGGAGGA 24858 || || || Sbjct 66897 CTTGAAGA 66904 >seq534 Length=9540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 278/426 (65%), Gaps = 14/426 (3%) Strand=Plus/Plus Query 138193 GTTCTCAGATAATACATTCCCGTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAA 138252 |||| ||||| |||||||| || || | || |||| ||| ||||| | || |||||| Sbjct 3971 GTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 4030 Query 138253 GTGAGTAACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATG 138312 |||||| | |||||| | || | || || | |||||||||||| ||| Sbjct 4031 GTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAATG 4090 Query 138313 AAAGCGCCTCGATCAATGGCCATGTTAATTAAAT----TTTTACTTTTCATCTCCCACAC 138368 | || |||||||| ||||||| | |||| |||| | || || ||||| || Sbjct 4091 TACGCTCCTCGATCGGCAGCCATGTCCA--AAATCGCCTTTTGC--TTGATTTCCCAAAC 4146 Query 138369 GGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTT 138428 || ||||| || | ||| |||| ||| || |||||||| | | ||| Sbjct 4147 TGTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCG-C 4205 Query 138429 GGCCGC-AATGATGCGATTTCTCATGTCATCGTTGT--ACAGATTCAACTTGATCAAGTC 138485 | ||| || ||| |||| | | ||| | ||| ||| ||||| || || | || Sbjct 4206 GATCGCGAAGGATTTGATTCCGAACGTC--TGATGTCCACAAATTCATCTCAATAAGCTC 4263 Query 138486 GTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAAT 138545 | || |||||| |||| | | |||||| || || | || || ||| | | || Sbjct 4264 TTCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACAT 4323 Query 138546 GTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGT 138605 |||| ||||| ||||| | || ||| || || ||||| |||||||| | ||||| Sbjct 4324 GTTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGT 4383 Query 138606 CGGCAT 138611 ||||| Sbjct 4384 TGGCAT 4389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449856777416520