Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq534 150 4e-31 seq1573 109 1e-18 seq12 96.9 8e-15 seq39 87.8 4e-12 >seq534 Length=9540 Score = 150 bits (166), Expect = 4e-31 Identities = 421/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 110271 ATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGT 110330 ||||||| | ||| | |||| |||| ||||||||||| || |||||||| || Sbjct 5790 ATTATCGGTGATA---GAGACTTTGATTACGACTATTTTGGCTTTAAAACTCTGGAGAAA 5734 Query 110331 GCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGT 110390 | ||| | | ||||| ||||| | | |||||| || ||||| ||| | | || Sbjct 5733 TCGTATCTGTTGCGTGTGAATGGAAAAGTGTGTGAACGCCCACAACATATGATAATGCGA 5674 Query 110391 GTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTA 110450 || || | || || || | | || | | || ||| | ||| ||||| | Sbjct 5673 GTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGTTTTGGAAACGTATGAACACAT- 5615 Query 110451 AGTAAAAAGAAAGCTATT----CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGG 110506 || | || ||| | || ||||| ||||| || || || || || ||||| | | Sbjct 5614 -GTCACAA--AAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCG 5558 Query 110507 AGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTA 110566 | ||||| | || || ||||| || || | ||||||||||| || || ||||| Sbjct 5557 ACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTA 5498 Query 110567 TGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT 110626 || | || ||| || ||| |||||| || |||| || ||||| | | Sbjct 5497 CGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTAT 5438 Query 110627 TCATGATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGAC 110685 | |||||||||| | | || | |||| | |||| || ||| | |||| Sbjct 5437 TTCCAATATTCGCTCCACCAACAGTTATATTCGCGGGA-CGAATGGAAGTTCGAATGGAA 5379 Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---A 110742 ||||||||||| | | || ||||| ||||| || ||| || ||||||| ||| | Sbjct 5378 TTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGCGGTGGGA 5319 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || || ||||| || ||||| || || ||||| | ||||| ||||| || Sbjct 5318 AGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGGCACGCGGATATCTTTGAGTTTC 5259 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| ||||| ||| |||| || |||| || ||||| |||||||| Sbjct 5258 TGGAACTACGTAAGAATCATGGAAATGAACTCCATCGAGCTCGAGATTTGTTTTATGCTC 5199 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||| | ||| | || ||||||||||| |||| || Sbjct 5198 TTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGACAA 5159 >seq1573 Length=148509 Score = 109 bits (120), Expect = 1e-18 Identities = 377/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Plus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||| || |||| || ||| || |||||||||||| | | || ||| | Sbjct 117961 TATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCAAGCTTTT 118020 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||| | ||||| |||||| || | || || |||| ||| || || | | Sbjct 118021 GGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATATCGGACA 118080 Query 131553 ATGAAAAAGATTTTGTTTCCAAA---GTTCTTGCATTCTTCGCCGGAAGTGATGGCATTG 131609 |||||| | | ||| | |||| || | || ||||| || | |||||||| |||| Sbjct 118081 ATGAAAGACACTTTAT---CAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGAATTG 118137 Query 131610 TTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGT 131669 | | ||||||||| | || ||||||| || || | || || |||| || | Sbjct 118138 TCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGATGCT 118197 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | ||| ||||||| || | ||| ||| || || ||||||| |||||||||| Sbjct 118198 TTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGATTG 118257 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTC 131789 | | | ||| || | ||| ||| | | ||| | || | | | | | | Sbjct 118258 ATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGTGCGCGATTGAAACAATCC 118317 Query 131790 C-TGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGG----ATTCAAGATGATTCCGC 131844 | ||| ||| || |||||| ||||||| | |||||| || ||| | || || | Sbjct 118318 CGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGT-ATGCCTC 118375 Query 131845 TAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 ||| | |||| | ||||| ||||| || ||||| || || || || || | Sbjct 118376 G---TTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATC 118432 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 ||||| |||| |||||||| ||||| || ||||||||||||||||| | || || || Sbjct 118433 ATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCAAA 118492 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | | ||||| | ||||||| | | ||| ||| ||||| Sbjct 118493 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGC 118534 >seq12 Length=89838 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/158 (75%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 305334 TGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGT-A 305392 |||||||| | || || ||| |||| |||||||| || ||||| ||| | ||||| | Sbjct 59218 TGTTCAATCGTCAGCCTTCATTGCACAAAATGTCAATCATGGCACATCGGGCGAAAGTCA 59159 Query 305393 TTATCTGGATTGACATTTCGATTAAATGTAAGTGC--TTGTACGCCTTATAATGCGGATT 305450 | ||||| || ||||| || |||| ||||| ||| |||| |||||||| |||| Sbjct 59158 TGCCCTGGAGA-ACTTTTCGTTTCAATG--AGTGCGTTTGCTCGCCCTATAATGCCGATT 59102 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||||||| |||||||||||||| | || ||| || Sbjct 59101 TCGATGGAGACGAAATGAATATGCACCTGCCACAAACA 59064 >seq39 Length=11436 Score = 87.8 bits (96), Expect = 4e-12 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||| | || ||| | |||||||| ||||| || |||||||| ||| | || | | Sbjct 7815 GATTTGGTGTTATTTAATCGTCAACCATCTCTGCACAAGATGTCTATCATGTCCCACAGA 7874 Query 305384 GTCAAAGTATTAT-CTGGATTGACATTTCGATTAAATGTAA--GTGCTTGTACGCCTTAT 305440 ||||| || || |||| | |||||||| | || || ||| || | || || Sbjct 7875 GTCAAGGTCTTCCACTGG-TCCACATTTCGTCTCAACTTATCGGTGAC-GT-CTCCCTAC 7931 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||| ||||| |||||||||||||||||| ||||||| || || ||| Sbjct 7932 AATGCAGATTTCGATGGAGATGAAATGAATCTGCATGTTCCGCAGTCA 7979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186702419362899