Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2230 122 6e-23 seq3420 95.1 8e-15 seq2330 91.5 1e-13 seq623 87.8 1e-12 >seq2230 Length=15872 Score = 122 bits (134), Expect = 6e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| ||||||||||| | ||| || || |||| |||||||||||||| || |||| Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||||||||| || || | || | ||||| ||||| ||| ||| ||| |||| Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTC-ACATTA 102 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||| |||||| || |||| ||||| ||||| || || | || || || Sbjct 101 TCGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACG 42 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 41 AAAATCTGCAT 31 >seq3420 Length=11708 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| ||| || || ||||| || ||||||||||| | Sbjct 296 ACCACCACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGC 237 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| |||||| || || || |||| ||| |||||||| | || Sbjct 236 AAGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGG 177 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || | | |||| || | ||||| || || | Sbjct 176 AATTCCTTCCTTGTCTTGAATCTT-GGCCTTTACATTATCGATCGTGTCTGAAGACTCAA 118 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || ||||| || |||| ||| || ||||| || ||||| Sbjct 117 CTTCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCAT 69 >seq2330 Length=206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || ||||||||||| | || || ||| |||| || | |||||| || || || Sbjct 16 TCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCAGCGAAG 75 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||| |||||||| | || | ||||||||||| ||| || | | |||| Sbjct 76 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTT-GGCCTTTACATT 134 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||| || || || || | ||||| || || || || | |||||| || Sbjct 135 ATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCAC 194 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 195 AAAAATCTGCAT 206 >seq623 Length=41192 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || |||| |||| ||||| ||||| ||||| || ||||||||||| | Sbjct 13038 CACCACCGCGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCG 12979 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||| || | || ||||||||||| || |||||||| | |||||| || || | | Sbjct 12978 CTAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGG 12919 Query 33641 GCACACCT 33648 | | |||| Sbjct 12918 GAATACCT 12911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328674919865280