Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2330 129 1e-24 seq3420 111 4e-19 seq2230 86.0 1e-11 >seq2330 Length=206 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || ||||| || |||||||||||||| || ||| ||| Sbjct 203 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCCGAC 144 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| |||||||||||| || || ||| Sbjct 143 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 84 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || || || | ||||| ||| | ||| | || ||||||||| || Sbjct 83 CGTCTGATCTTCGCTGGTAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAACATC 24 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 23 CAGAAAGAATCAAC 10 >seq3420 Length=11708 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || || |||||||| || ||| ||||| |||| Sbjct 84 AAGACGCTAACTGGGAAAACTATTACGTTGGAAGTTGAGTCTTCAGACACGATCGATAAT 143 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || ||||||||| || || ||| | || |||||| Sbjct 144 GTAAAGGCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGATCAGCAACGTCTGATCTTC 203 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||| || | || | || ||||||||| | |||||||| ||| Sbjct 204 GCTGGTAAACAACTGGAAGACGGTCGCACGCTTGCGGATTACAACATTCAGAAAGAATCT 263 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 264 ACGCTTCATCTGGT 277 >seq2230 Length=15872 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| |||||| | || || ||| || ||| Sbjct 34 CAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCCGAC 93 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||||||| || ||| || Sbjct 94 ACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAACAG 153 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| ||||| || ||||| || || | || | || ||||||||| || Sbjct 154 CGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAACATC 213 Query 206353 CAGAAAG 206359 || |||| Sbjct 214 CAAAAAG 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181710883648539