Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3420 125 7e-24 seq2230 111 2e-19 seq534 95.1 1e-14 >seq3420 Length=11708 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| || || ||||| ||||| || ||||||||||| || ||| ||| || Sbjct 286 AGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGA 227 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || || ||||| || || || |||| ||| |||||||| || || || ||||| Sbjct 226 CCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 167 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || || || || | ||||| || || || || || | ||| Sbjct 166 TTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAACGTA 107 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || |||| || ||||| |||||||||||| Sbjct 106 ATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2230 Length=15872 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 ||||| |||||||| || | | || | ||| || | ||||| ||||| |||||| Sbjct 218 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 159 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 |||||||| || ||||| || || ||||| || |||||||| || || || || Sbjct 158 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 99 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | |||||||| ||||| || || ||||| || ||||| ||||| | || || |||||| Sbjct 98 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 39 Query 134706 ATTTGCATT 134714 || |||||| Sbjct 38 ATCTGCATT 30 >seq534 Length=9540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 459/717 (64%), Gaps = 31/717 (4%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||| | || |||| | || ||||| | |||||| ||||| |||||||||||||| Sbjct 5019 GCCATTTTGGATAGTCAGATTGAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGT 4960 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || ||| |||||| || | || |||||| | | |||||||| ||| |||| Sbjct 4959 AATCGTAAATCCAATCAGCAGAATCTTGGAACCATTCGATCAAGCAATCTCTGCTGTGAA 4900 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTG----TG 8408 || | ||||| | || | |||||||| || |||||| | || || | || Sbjct 4899 ATCATCGAGTACTCAGACTCCAAAGAAGTGGCAGTATGCAATTTGGCTTCCATCGCATTG 4840 Query 8409 TTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGC 8468 | ||| || || ||| ||| | || | | |||| | |||| | ||| Sbjct 4839 TCAAAA----TTTGTGTATCAG-----AAAGAATTTCAA-TTTGCAAAATT---ATACGA 4793 Query 8469 CGTG-CAAGTGACGGTACGCAA--TTTAGATCGCATCATTGATGTCAATTTTTATCCCTT 8525 | ||| || |||| || | | | ||||||||| |||||| |||||| | Sbjct 4792 AATCACAAAAATCGTTACGAAAAATCTCAACAAAATCATTGATCTCAATTATTATCCGAT 4733 Query 8526 GGAAGAAGCGCGCGT-ATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTC 8584 ||||| | || | | | || ||| || |||| |||| | ||||| ||||||| Sbjct 4732 TCCTGAAGCACAAGTGAGCAATCA-GCGACATCGACCGATTGGAATCGGCGTTCAAGGTC 4674 Query 8585 TGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCA 8644 | ||||| ||||| || || | || || | |||||| ||| || ||| ||||| Sbjct 4673 TTGCCGATACGTTTTTACTGATGAGTCTTCCATTTGAAAGCAAAGCTGCTCGCGAGCTCA 4614 Query 8645 ACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCC 8704 ||| | |||| |||||| |||||| || || | ||||| | || | || | Sbjct 4613 ACAAAGAAATTTTTGAAACGATGTATTTCGCGGCGATGGAAGCTTCCATGGAATTGGCAC 4554 Query 8705 GAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAAT 8764 | ||| | || ||||||| || || || || | || || || || || |||| Sbjct 4553 GGGAACTCGGACCGTACGAGAGCTATGCTGGATCACCAGTTAGTCGAGGTATCTTTCAAT 4494 Query 8765 ACGACATGTGGAATGTCACGCCCACCTCT--TTG-TGGAATTGGAGCGATTTGAAAC-GC 8820 || |||||| | |||| ||| || | | ||| |||||| | |||||| || Sbjct 4493 TTGATATGTGGCAGGTCATTCCCGATTCCGGTCGATGGGATTGGAAGCAGTTGAAAGAGC 4434 Query 8821 AA--AATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCA 8878 || | | |||| ||| | || || || || || | ||| ||||| |||||| Sbjct 4433 AAGTAGCTACTCA---CGGAATCCGAAACTCTTTGCTGCTCGCTCCGATGCCAACCGCCT 4377 Query 8879 CGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGT 8935 | || |||||||| | || || ||| || | ||||||||||| |||| ||| Sbjct 4376 CAACGGCTCAAATTCTCGGCAATTGCGAGTCTATCGAGCCGTTCACTTCCAACATGT 4320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505352541412680