Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1573 293 3e-74 seq534 291 1e-73 >seq1573 Length=148509 Score = 293 bits (324), Expect = 3e-74 Identities = 624/915 (68%), Gaps = 35/915 (4%) Strand=Plus/Minus Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 ||||| |||||||||||||| ||||| || ||||| |||| || || || | ||||| Sbjct 118822 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 118763 Query 39392 AAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTC-TGAAATCAATCT 39450 | ||||| ||||||| || | |||| || | | || | | | || || ||||| Sbjct 118762 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAA-CAATCG 118704 Query 39451 ATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAAC 39510 ||| || ||||| || |||||| ||||| |||||||||| || || | || Sbjct 118703 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGAC 118644 Query 39511 TGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG-ATG 39569 ||| || | || || ||| |||| ||||||| ||||| || | || || | ||| Sbjct 118643 TGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATG 118584 Query 39570 TTACTACCTCATCACTCGGTGGATGCAA---TAAATGTTTAAA---CATTAAGCAGGCGA 39623 | || | | || |||| || || |||| | ||| | || || | Sbjct 118583 --AATAGAGCCT---TC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 118531 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 ||||||||||||| || ||||| | ||| || | || || ||||| |||||||||| Sbjct 118530 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 118471 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCAGAAAAGAAGATGCCT 39742 | | || || || || ||||||||||| | |||| || ||||| || || ||||| ||| Sbjct 118470 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 118412 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATC----CA 39798 || || || ||||| || || | ||| ||| | | | || || || ||| || Sbjct 118411 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCA 118353 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| ||||| | ||||| || | || || || |||||||| || || | | Sbjct 118352 TTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAA 118293 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 || ||||||||| |||||| | |||||||| || || | ||||| ||| || Sbjct 118292 ATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGA 118233 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 || || ||||| || || || |||||||||||||| |||| ||||| | || || || Sbjct 118232 GTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAAC 118173 Query 39979 CTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 ||| || ||| || | || | ||||||||| || ||||||||||| || ||||| Sbjct 118172 CTCACTGCTGAAATTCATGGCG--AGATTTTCATTGACAATTCCATCACTGGCTGCAAAG 118115 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT-CAATTTATT---CCAGTC 40092 || ||||| || ||||| ||||| | | |||||| ||| | || |||| |||||| Sbjct 118114 AAGGCCAACACGTGTTTGATAAAGTGTCTTTCAT----TGTCCGATATATTAAGCCAGTC 118059 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 ||| || || | | ||| | |||||| || |||||||| |||||||| || || Sbjct 118058 ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTT 117999 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 ||||||| ||| || ||| | |||||| ||||| | ||||| | || ||||||| Sbjct 117998 ATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTC 117939 Query 40213 TGCAAGGATGGGTTC 40227 | ||| | ||||| Sbjct 117938 TCGAAGAAAAGGTTC 117924 >seq534 Length=9540 Score = 291 bits (322), Expect = 1e-73 Identities = 1187/1852 (64%), Gaps = 44/1852 (2%) Strand=Plus/Plus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 ||| || ||||||||||| || || || |||||| ||||| ||||||||||||| Sbjct 3970 TGTTCGGAGATAGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 4029 Query 68463 TGTTAGTTTGGAATAAC--TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCG 68520 || ||||| | | || | || ||||| || |||||||| | |||||||| ||| Sbjct 4030 AGTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAA 4087 Query 68521 ATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATA 68580 ||| | ||||||| ||| || ||||| | | ||| |||||| |||||||||| Sbjct 4088 ATGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACT 4147 Query 68581 GTCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCA 68637 || || | | | ||| | || | |||| | ||||||| | ||| || | | Sbjct 4148 GTTTTGTACTTTTCTTTCACATGAGGCGGAATTTCAGCGATATTTTGTACGGAACCGCGA 4207 Query 68638 TCGGATATAATTATATTCTTGATCTCATCAT-TCCACAATTTTCTCTCCGTTAAAACTCT 68696 ||| | ||| |||| | || | || ||||||| || |||| | || |||| Sbjct 4208 TCGCGAAGGATTTGATTCCGAACGTC-TGATGTCCACAAATTCATCTCAAT--AAGCTCT 4264 Query 68697 A--AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | ||||| || || ||| |||||| |||| | || | ||| || | || Sbjct 4265 TCCATGAGATATTTGTTGACAATTGTAAATTCTCCAGCGAGGACGCGTCGATTGAACATG 4324 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || || | || || | ||| || ||| || ||||||||||| ||||| || ||| Sbjct 4325 TTGGAAGTGAACGGCTCGATAGACTCGCAATTGCCGAGAATTTGAGCCGTTGAGGCGGTT 4384 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| || || | || ||| |||| | || || || | || ||||| | Sbjct 4385 GGCATCGGAGCGAGCAGCAAAGAGTTTCGGATTCCGTGAGTAGCTACTTGCTCTTTCAAC 4444 Query 68875 TGTTTCCAATCCCAAAGATCAGAT---GGTACAACATTCCAAAGATCGTATTGTAGAATT 68931 || ||||||||||| || | || || | || | ||| | ||| |||| | || Sbjct 4445 TGCTTCCAATCCCATCGACCGGAATCGGGAATGACCTGCCACATATCAAATTGAAAGATA 4504 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC---TTCCTGTTCAGCTAGT 68988 || ||| | ||||||| ||| | || || ||||| |||| || || | | Sbjct 4505 CCTCGACTAACTGGTGATCCAGCATAGCTCTCGTACGGTCCGAGTTCCCGT---GCCAAT 4561 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || || || | || || |||| || ||||| ||||| | || ||||| || Sbjct 4562 TCCATGGAAGCTTCCATCGCCGCGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCG 4621 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 | || || || || |||||| | | || | ||| | ||| || | || ||| Sbjct 4622 CGAGCAGCTTTGCTTTCAAATGGAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGA 4681 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || || || || || |||| ||||| || ||| || ||||| ||||| |||||| Sbjct 4682 ACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAA 4741 Query 69169 TAATTAATATCTATAATTTTATTAAGATTT--CGGACTACTACTTTAACCACGTCCTTTA 69226 ||||| | ||| || ||||| || |||||| || | || | ||| | || | || Sbjct 4742 TAATTGAGATCAATGATTTTGTTGAGATTTTTCGTA--ACGATTTTTGTGATTTCGTATA 4799 Query 69227 GTTTGAGAAAATCAAATCGTCCATCTATAACAAACATATT--CAGTGCTACAGATGCTAG 69284 ||| ||| | |||| || ||| ||| | || || || ||| | || || | Sbjct 4800 ATTTTGCAAATTGAAAT--TCTTTCTGATACACAAATTTTGACAATGCGATGGAAGCCAA 4857 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344 ||| || ||||| || || || || | || || | || || || || ||||| || Sbjct 4858 ATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGATGATTTCACAGCAGAGATTGCT 4917 Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 || || || || ||||| |||||||| || ||||| ||||| |||||||| Sbjct 4918 TGATCGAATGGTTCCAAGATTCTGCTGATTGGATTTACGATTACAAGCGTCTTTGTAAAG 4977 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 ||| |||| || || || ||||||||| || | ||| | ||||| || | || Sbjct 4978 CATATACGGCGTTCCGGTCTCAATCTGACTATCCAAAATGG-----CAAACCACAATTGC 5032 Query 69465 ATTTATT--ACGGTCTT----GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTC 69518 || || ||||| | || | || | || || | | |||||| | || Sbjct 5033 TGGGCTTTGACAGTCTTTCGGGCAATGTTT-TGAGACTCGTACTTTTTATATAACGCATC 5091 Query 69519 GAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCA 69578 ||||| |||||| |||| | || ||| || || ||||| | || ||| Sbjct 5092 AAATTCGCTTCCCCATGTCTCATAAAGTCGTGGAGCCTCGTTCGGACAGAATAAACTCCA 5151 Query 69579 CACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 | | | || | || ||||||||||| |||||||| ||||||||||| ||| | Sbjct 5152 TTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGGGATCCAAAGAGCATAAAACAA 5211 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||||| | || || ||||||||| ||| || || || |||||||| | || Sbjct 5212 ATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGAT 5271 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCCTCCCT 69757 ||| | ||||| || |||||||| || || | ||| || || || || || | Sbjct 5272 ATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGAC-CCTTTCCGCTTCCCACCGCCTT 5330 Query 69758 GATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATT 69817 |||| | ||||| || |||| ||| | || | ||||| |||| ||| ||||| || Sbjct 5331 GATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCATTGGAACAATTCCATTCGAAC 5390 Query 69818 TACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTA 69877 | ||||| || || ||||||||| | | ||||||||| |||| | || | Sbjct 5391 TTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAATATTGGAAATACTGACGCCAA 5450 Query 69878 TTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTA 69937 | || || ||| || || || ||||| |||||| ||||| || || || || | Sbjct 5451 TACCGCCAGCCCACTTTGAAATACACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGA 5510 Query 69938 TGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCG 69997 | ||||||| |||| | |||||||| || | ||| | | ||||||| Sbjct 5511 TAGAATCATCTTGCATGGATAATAGAAAACACGACGATAATTGGGGTCGAGGCGTTCCCG 5570 Query 69998 CATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTT 70057 |||| || | || |||| ||| || || || | |||| || | | | || |||| Sbjct 5571 CATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTTTTGTGACATGTGTTCATACGTTT 5630 Query 70058 CAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 | | | | | || | || | | || || || | || || ||||| | |||||| | Sbjct 5631 CCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCGACAGCCACTCGCATTATCATATGTT 5690 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 | || ||||| | ||| ||| | |||||| || ||||| ||||||||||||| Sbjct 5691 GTGGGCGTTCACACACTTTTCCATTCACACGCAACAGATACGATTTCTCCAGAGTTTTAA 5750 Query 70178 ACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 | |||||||||| ||| ||||||||| || ||||| | ||||| || Sbjct 5751 AGCCAAAATAGTCGTAATCAAAGTCTCTATCACCGATAATTGCGGAATTGAG 5802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686846471612760