Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1573 279 4e-70 seq474 152 4e-32 >seq1573 Length=148509 Score = 279 bits (308), Expect = 4e-70 Identities = 629/919 (68%), Gaps = 36/919 (4%) Strand=Plus/Plus Query 43675 TTTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATG 43734 ||| ||| |||||||||| | |||||| | ||||| || ||| | ||| || || Sbjct 117929 TTTTCTTCGAGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTG 117988 Query 43735 GCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAA 43794 | | ||||| || |||||| |||| |||||||| ||||||||| | |||||| | Sbjct 117989 GGACATGTATAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCA 118048 Query 43795 AGACTTAGCACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTT 43852 ||| | | ||| || | || | | |||| |||| ||| ||||| || Sbjct 118049 TGACATGAATGACTGGCTT--AATATATCGGACAATGAAAGACACTTTATCAAACACGTG 118106 Query 43853 TTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG 43912 ||||| || ||||| || || || || || |||||||||||| | | | | ||| | Sbjct 118107 TTGGCCTTCTTTGCAGCCAGTGATGGAATTGTCAATGAAAATCTCGCCA-TGAATTTCAG 118165 Query 43913 CAA-GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || || ||||| | || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 118166 CAGTGAGGTTCAGATCCCCGAAGCTCGATGCTTTTACGGATTTCAAATTGCAATAGAAAA 118225 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA 44031 ||| || |||||| |||| | |||| ||||| |||||||||||| || || Sbjct 118226 TATACACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACTGAAAA 118285 Query 44032 GCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGG 44090 || | || | ||||| |||||| | || |||| ||| |||||||| | |||| Sbjct 118286 ACAGCATTTACTGTGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGG 118344 Query 44091 CCCTTAAATGGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | | |||||| || |||| || || |||| |||| || | || || ||||| | Sbjct 118345 CGTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGG 118404 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGA 44206 || ||||| || || || || ||||| || ||| | ||||||||| | ||||||||| Sbjct 118405 CCGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGA 118463 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 || ||||||||||| | |||||||||||| | || |||||||||||||| ||||| Sbjct 118464 GGATTGATGCCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACAT 118523 Query 44267 TGCGATTTTGCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG- 44323 || || ||||| || || |||| | | || | | ||||| |||| | | | Sbjct 118524 TGTGACTTTGCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGC 118577 Query 44324 ACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GC 44382 | ||| | || || || || || | || |||||||||||| | || | | | Sbjct 118578 TCTATTCATGCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTC 118636 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | | || || | |||| ||||||||| | ||||||| ||||| || || | | Sbjct 118637 ACTTCCAGTCGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGT 118696 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAAC 44497 || ||||| || | | ||| | ||| | | || ||||| | | || | Sbjct 118697 GGCGGATCGATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCACGCTTCTAATC 118752 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || ||||| | ||||| | ||||| || |||| ||||||||||||||||| |||||| Sbjct 118753 CC-TTTGACTGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGC 118811 Query 44558 GTTGGAGAATATCAGCGAA 44576 |||||||||||| ||||| Sbjct 118812 GTTGGAGAATAT--GCGAA 118828 >seq474 Length=30871 Score = 152 bits (168), Expect = 4e-32 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | ||| ||||| ||||| || || |||||||| || || Sbjct 11062 CGACGTATCATCTTATCCGCTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 11003 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| || | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 11002 TGTCATCTGATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 10943 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || ||||| || || || || || || | || Sbjct 10942 CGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATATTGCTAGCTACGCGCTTTTGACA 10883 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 10882 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 10823 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 10822 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 10763 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 10762 CCGTTTCCAACACT 10749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397420837440295