Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq534 165 1e-35 seq1573 158 2e-33 >seq534 Length=9540 Score = 165 bits (182), Expect = 1e-35 Identities = 676/1050 (64%), Gaps = 37/1050 (4%) Strand=Plus/Plus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG--ACTTTCGC 111109 ||| || ||||||||||| || | ||||| |||| |||||| ||| |||| || Sbjct 4666 ATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTCACTTGTGC 4725 Query 111110 G-CAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| || |||||| |||| ||||||| | ||| |||||||| ||||| || Sbjct 4726 TTCAGG---AATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCGTAACGAT 4782 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 ||||||||||| | | |||| || | | ||| | | | ||| || ||| | || Sbjct 4783 TTTTGTGATTTCGTATAATTTTGCAAATTGAAA--TTC---TTTCTG-ATACACAAATTT 4836 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 || | ||||| || ||||||||||| || ||| || | |||| |||||| | Sbjct 4837 TGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGAGTACTCGAT 4896 Query 111289 AATTTCTGTACATAAGTTG---GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 ||||| || | ||| || | ||| || || | ||||| || || || Sbjct 4897 GATTTCACAGCAGAGATTGCTTGATCG---AATGGTTCCAAGATTCTGCTGATTGGATTT 4953 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 4954 ACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATCTGACTATCCAA 5013 Query 111406 AATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGCCTCG 111463 ||| || ||| | | |||| ||| | | || ||| | | |||| Sbjct 5014 AATGGCAAACCACAATTGCTGGGCTTTGACAGT--CTTTCGGGCAATGTTTTGAGACTCG 5071 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTC-CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 |||||| | || | || ||||| || || |||| | || | || | ||| |||| Sbjct 5072 TACTTTTTATATAACGCATCAAATTCGCTTCCCCATGTC-TCATAAAGTCGTGGAGCCTC 5130 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || |||||||| | | ||||| || || || || ||||| || || || || Sbjct 5131 GTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGATCGGG 5190 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||| || | |||| | ||||| | ||| ||| | || || || || Sbjct 5191 GATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTCTTACG 5250 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC 111702 || || || ||||| | ||||||||||||||| ||||| ||||| | ||| | ||| || Sbjct 5251 TAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAAGACCC 5310 Query 111703 CTTTCGACGCCCAGC---TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 || || |||| | ||||| || || || |||||| | || || || |||||||| Sbjct 5311 TTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGAAGCAT 5370 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 ||||| ||| |||| || ||||| ||||| |||||| | || ||| | | Sbjct 5371 TGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAGCGAAT 5430 Query 111820 ATCATGGATGTGC--ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 || |||| | | | |||||||| |||||||||||||| || |||||| | | Sbjct 5431 AT--TGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATTGTTTC 5488 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | || || |||| ||| || || || | ||| | || || || || Sbjct 5489 AGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACGACGAT 5548 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATA 111994 | || |||| || || || |||||||| || || || ||||| || || |||| | Sbjct 5549 AATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGAACTT- 5607 Query 111995 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 ||| ||||| | || || || ||||| || | || | | || ||| |||||| Sbjct 5608 --TTGTGACATGTGTTCATACGTTTCCAAAACGGCGTCCAAATTCTCTTTGTGTATGCCG 5665 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGGG 112084 | || || ||||| | ||| | |||||| Sbjct 5666 ACAGCCACTCGCATTATCATATGTTGTGGG 5695 >seq1573 Length=148509 Score = 158 bits (174), Expect = 2e-33 Identities = 307/449 (68%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || || ||||| || || || |||||||| ||||| || || ||||| | || Sbjct 118522 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 118463 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 || ||||||| |||| | |||| ||||||||| |||||||| ||||| || || || | Sbjct 118462 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 118403 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| || | | | ||| || || ||| | |||||| ||| ||||||||| ||| Sbjct 118402 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 118343 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 |||| || || || || || || | |||| || || | ||| |||| ||| Sbjct 118342 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATGCTGTTTT 118283 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 122970 |||| | ||| || |||||| | ||||||||| ||||| ||| || | || Sbjct 118282 TCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTT 118223 Query 122971 TCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || ||| ||| |||| || |||| || | || |||||| |||||||||||| | | Sbjct 118222 TC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CTG 118166 Query 123029 CA-AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 | ||||| | || ||| ||| ||||||||||| | |||||||| |||| Sbjct 118165 CTGAAATTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAGGCCAAC 118106 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTC 123116 | || || || || | ||||||| || Sbjct 118105 ACGTGTTTGATAAAGTGTCTTTCATTGTC 118077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627975013946400