Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1573 114 2e-20 seq534 102 1e-16 >seq1573 Length=148509 Score = 114 bits (126), Expect = 2e-20 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || || || ||||| |||||| ||||| || ||||| || || ||||| | || Sbjct 118522 TGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCT 118463 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 || ||||||| ||| || || | || ||||| || ||||| ||||| || || || | Sbjct 118462 CGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCC 118403 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 130207 || || || | | | || ||||| ||| |||||| ||| |||| |||| |||| Sbjct 118402 GCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCACCATTTCAACGCC 118343 Query 130208 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG-AGTTCCTTCTT 130266 || || || || || | ||||||| || | ||||| || || | | || || Sbjct 118342 CATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG-CACAGTAAATGCTGTTT 118284 Query 130267 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT 130326 ||| | ||||||||||||||| |||| || | | ||||| ||| || | | Sbjct 118283 TTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATT 118224 Query 130327 TTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCT 130384 ||| ||| ||| ||| | |||| || | || |||||| ||||| |||||| || Sbjct 118223 TTC--TATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTCA-CT 118167 Query 130385 GC-AAAATTGTTATTGATATTCTCAAAAACAATTCCATC 130422 || ||||| | || ||| ||| ||||||||||| Sbjct 118166 GCTGAAATTCATGGCGAGATTTTCATTGACAATTCCATC 118128 >seq534 Length=9540 Score = 102 bits (112), Expect = 1e-16 Identities = 374/578 (65%), Gaps = 11/578 (2%) Strand=Plus/Plus Query 118934 CTCGTACTTTGTGTAGAGGGCTTCAAACTC--TTCACCCACGGCCTCTGAGAGCCCTGGT 118991 |||||||||| | || | || ||||| || ||| |||| | | || | || | ||| Sbjct 5068 CTCGTACTTTTTATATAACGCATCAAATTCGCTTC-CCCATGTC-TCATAAAGTCGTGGA 5125 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 |||| | || ||||| | | ||||| || || || || ||||| || || Sbjct 5126 GCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAACAGA 5185 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || |||||||| || || | || | ||| ||| ||| ||||| || ||||| Sbjct 5186 TCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATGATTC 5245 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 ||| | |||| ||| || | ||||||||||||||| || || || || | || | Sbjct 5246 TTACGTAGTTCCAGAAACTCAAAGATATCCGCGTGCCAGGGCTCTAGATAAATTGCAAAA 5305 Query 119172 GACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 ||||| || || | ||| | || | || || | || ||| | || || || ||| Sbjct 5306 GACCCTTTCCGCTTCCCACCGCCTTGATCAACGTATCGAGCTGTGTCATTGAACACCCGA 5365 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCT 119288 |||||||||| || |||| || ||||| ||||| |||||| | || ||| Sbjct 5366 AGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGTGGAG 5425 Query 119289 CTGACATCGTGGATGTGC--ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 119346 | || || |||| | | | |||||||| || ||||||||||| || ||| || | Sbjct 5426 C-GA-ATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACATT 5483 Query 119347 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 119406 | || || |||| || || ||||| || ||| | | | | | || || || Sbjct 5484 GTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACACG 5543 Query 119407 TCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACA 119466 ||| | ||| || | || || || || ||||| || || || || || || | || | Sbjct 5544 ACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAAGA 5603 Query 119467 TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCG 119504 ||| ||||| | || || || ||||| |||||| Sbjct 5604 ACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCG 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618379084736040