Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq534 158 1e-33 >seq534 Length=9540 Score = 158 bits (174), Expect = 1e-33 Identities = 632/982 (64%), Gaps = 41/982 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| | ||| | ||||| ||||| |||| || || || | | || | || Sbjct 5695 CCCACAACATATGATAATGCGAGTGGCTGTCGGCATACACAAAGAGAATTTGGACGCCGT 5636 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATT---CACGCAACACCAACCCT 104337 ||||| || || || | ||||| ||| | |||| || || ||||| || || || Sbjct 5635 TTTGGAAACGTATGAACACATGTCACAA---AAGTTCTTTACGCATGCAACTCCGACGCT 5579 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||||| || || || |||||||| | || || || || | ||| | || Sbjct 5578 TTTCAATGCGGGAACGCCTCGACCCCAATTATCGTCGTGTTTTCTATTATCCATGCAAGA 5519 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 || || ||| |||| || || | || || | | |||||| || ||||||||||| Sbjct 5518 TGATTCTATCGACGGCATTTACGACACGCTGAAACAATGTGCGTGTATTTCAAAGTGGGC 5459 Query 104458 TGGGGGTATTGGGAT--GCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||| |||||||| | | | |||| || | | ||| || | |||||| ||| Sbjct 5458 TGGCGGTATTGGCGTCAGTATTTCCA--ATATTCGCTCCACCAACAGTTATATTCGCGGG 5401 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| || |||| ||| ||||||||||||| || || || | |||||| || Sbjct 5400 ACGAATGGAAGTTCGAATGGAATTGTTCCAATGCTTCGGGTGTTCAATGACACAGCTCGA 5341 Query 104576 TATGTAAATCAA---GCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || ||||| | |||| || || || ||| | ||| | ||||| ||||| ||| Sbjct 5340 TACGTTGATCAAGGCGGTGGGAAGCGGAAAGGGTCTTTTGCAATTTATCTAGAGCCCTGG 5281 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 |||||||||||| | ||||| || || | ||| || || || | || || Sbjct 5280 CACGCGGATATCTTTGAGTTTCTGGAACTACGTAAGAATCATGGAAATGAACTCCATCGA 5221 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || ||| | || | ||||| ||||| || ||||| || ||||| | || || || Sbjct 5220 GCTCGAGATTTGTTTTATGCTCTTTGGATCCCCGATCTGTTTATGAAACGTGTGGAAGAC 5161 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | ||| | | || ||||| || |||| || | || | || | | |||| Sbjct 5160 AACCAAGAATGGAGTTTATTCTGTCCGAACGAGGCTCCACGACTTTATGA-GACATGGGG 5102 Query 104813 GAG-GAGTTTGAAGCCCTTTACACAAAGTACGAG--GAAGAAGGTCGGGCGACTGCGACG 104869 || || ||||| || | || | |||||||||| | || | | ||| ||| Sbjct 5101 AAGCGAATTTGATGCGTTATATAAAAAGTACGAGTCTCAAAACATTGCCCGA--AAGACT 5044 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 || ||| | ||||| || ||| | | ||| | ||||| || || || Sbjct 5043 GTCAAAGCCCAGCAATTGTGGTTTGCCATTTTGGATAGTCAGATTGAGACCGGAACGCCG 4984 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGG----GTG 104984 || ||||||||||||||||| ||||| | || ||||| ||||| |||| | Sbjct 4983 TATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAGAATCTTGGAACCATT 4924 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGA---CAAAGATGAGA 105041 ||||||| ||||||||| |||||| | || | |||| |||||| | Sbjct 4923 CGATCAAG-----CAATCTCTGCTGTGAAATCATCGAGTACTCAGACTCCAAAGAAG--- 4872 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA 105101 ||| || || || | || || ||||| | | || | |||| ||| | ||||| Sbjct 4871 TGGCAGTATGCAATTTGGCTTCCATCGCATTGTCAAAATTTGTGTATC-----AGAAAGA 4817 Query 105102 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAG 105161 |||| | | || |||| | ||||| | || |||| || || ||||| || |||| | Sbjct 4816 -ATTTCAATTTGCAAAATTATACGAAATCACAAAAATCGTTACGAAAAATCTCAACAAAA 4758 Query 105162 TTATTGATAGAAATTTTTACCC 105183 | |||||| |||| ||| || Sbjct 4757 TCATTGATCTCAATTATTATCC 4736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583207876373160