Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq534 140 4e-28 seq3475 116 4e-21 seq1823 109 6e-19 >seq534 Length=9540 Score = 140 bits (154), Expect = 4e-28 Identities = 302/448 (67%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||||| ||||||||| || || || || || ||||| || || ||| || || || Sbjct 5610 CAAAAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAA 5551 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || | | ||| | ||||| || ||||||||||| ||||| ||| Sbjct 5550 TTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTACGACACG 5491 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 || || | ||||| || || |||||| | || ||||| || || || || Sbjct 5490 CTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAAT 5431 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || | | | || || |||||||| || | ||||||| || || Sbjct 5430 ATTCGCTCCACCAACAGTTATATTCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCA 5371 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| || || ||||| |||| || || ||||| | || || ||||||||||| || Sbjct 5370 ATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGCGGTGGGAAGCGGAAA 5311 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||||| || || || || || ||||| |||||||| || || | |||||||| || || Sbjct 5310 GGGTCTTTTGCAATTTATCTAGAGCCCTGGCACGCGGATATCTTTGAGTTTCTGGAACTA 5251 Query 53624 CGTCTGAATCAGGGTGACGAA-GAGAT-GCGCTGCCGTGACCTGTTTACAGCTCTGTGGA 53681 ||| |||||| || | ||| || | ||| || || ||||| ||||| |||| Sbjct 5250 CGTAAGAATCATGGAAATGAACTCCATCGAGCT--CGAGATTTGTTTTATGCTCTTTGGA 5193 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGA 53709 | || || || || ||| || ||||| Sbjct 5192 TCCCCGATCTGTTTATGAAACGTGTGGA 5165 >seq3475 Length=17365 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| ||||| ||||| | ||| || ||||| || |||||| || || ||||| || || Sbjct 9839 CGTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTG 9898 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || | |||| ||| |||| || || | | ||| |||| || || Sbjct 9899 ACCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAAC 9958 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || ||||| || ||||| || |||||||| || ||||| ||||| Sbjct 9959 AATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACAATATCC 10018 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| || || ||||| ||| | || || ||||||||||| ||| | | || Sbjct 10019 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 10078 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| || || |||| |||||| ||||| Sbjct 10079 CTTCCGTTGAGATGTTTTCAACCCGTC 10105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || |||| ||| |||||||| || ||||| ||| || || |||||||| Sbjct 9840 GTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTGA 9899 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || | || | ||| |||| || ||| ||| || |||| ||| ||| Sbjct 9900 CCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAACA 9959 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 || ||| || || ||||||||||| |||||||| || ||||| | || || || Sbjct 9960 ATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACA-ATATCC 10018 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 |||||||| || || ||||| || | || || |||||||| || || | | || Sbjct 10019 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 10078 Query 117544 CTTGCGCTGA 117553 ||| || ||| Sbjct 10079 CTTCCGTTGA 10088 >seq1823 Length=53609 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| || |||||| | || |||||||||||| Sbjct 35787 GTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTACCGAATTGT 35728 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||| || ||| || || || ||||| |||||||| || | Sbjct 35727 CCATTTGGAGACAATAGATTCGTATTATTACTTCCGGTAAAGTCTTGAGCCATATTAATG 35668 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||||||||| | || ||||| | || || || Sbjct 35667 ATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGATACATAACCG 35608 Query 117485 GCCAGCTGAGCCACCTTCATGTC 117507 || || || ||||| || || || Sbjct 35607 GCGAGTTGTGCCACTTTGATTTC 35585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547166346988200