Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2330 152 1e-31 seq3420 150 4e-31 seq2230 150 4e-31 seq3284 87.8 4e-12 >seq2330 Length=206 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||| |||||||| ||||||||||| || | ||| ||||| || || || || Sbjct 10 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCA 69 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || ||||| || |||||||||| |||||| ||||| || ||||| || Sbjct 70 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 129 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||||| || | |||||| |||||||| || || || Sbjct 130 ACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 189 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 190 TTCACAAAAATCTGCAT 206 >seq3420 Length=11708 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||| || || ||||| || ||||| ||||||||||| || Sbjct 290 ACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGT 231 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||| || || || |||||||| || ||||| || |||||||||| ||| Sbjct 230 GCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 171 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || ||||| || || || ||||| ||||| || ||||| || | Sbjct 170 TTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAA 111 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || || ||||| ||||| | |||||| Sbjct 110 CGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2230 Length=15872 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||| |||||||| || || | || || |||| || || |||||||| | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | || |||||||| ||||||| |||||||||||| || ||||| ||||| || | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| ||||| || ||| ||||| |||||||| || || || ||||| ||||| || | Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 40 AAATCTGCATT 30 >seq3284 Length=77587 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 || ||||| || || || || || || || || ||||||||||||||||||| ||||||| Sbjct 66907 CCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCC 66848 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| || || || || || ||||| | ||| || ||||| || Sbjct 66847 TTGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTA 66788 Query 211077 ATCGTCTTTCC 211087 || || ||||| Sbjct 66787 ATTGTTTTTCC 66777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159044191981535