Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq64 192 1e-43 seq3420 127 5e-24 seq2330 125 2e-23 seq9 123 6e-23 seq205 114 3e-20 seq2230 111 4e-19 seq332 109 1e-18 seq3673 91.5 4e-13 >seq64 Length=758 Score = 192 bits (212), Expect = 1e-43 Identities = 217/288 (75%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| ||||||| ||||| || |||| ||||||| | | ||||||| | Sbjct 92 ACTTTATATTTAATTTTTGGTGCTTTTTCAGG-ATTAGTAGGTACAACACTTTCTATTTT 150 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| ||| || || | |||||| ||| | || Sbjct 151 AATTCGTATGGAATTATCACAACCTGGTAATCAGATTTTTATGGGTAATCATCAATTATA 210 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||| || ||||||||||| ||| | |||||||| ||| | Sbjct 211 TAATGTAGTTGTAACAGCACATGCGTTCGTTATGATTTTTTTTATGGTTATGCCTGTTTT 270 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| |||||||| || | ||||||||||| || || |||||||||||||| Sbjct 271 AATTGGAGGTTTTGGAAATTGGTTTATACCTTTAATGATAGGAGCCCCTGATATGGCTTT 330 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || |||||||||||||| ||| |||| ||||| ||||| Sbjct 331 TCCTAGAATGAATAATATAAGTTTTTGGTTATTACCTCCTTCTTTATT 378 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 371385 TAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGA 371444 |||||| || ||||||| ||| |||| || | || ||| ||||| || |||| | ||| Sbjct 577 TAAACCTGGAGCTCTCATGTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAGA 518 Query 371445 AGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGC 371504 ||| || || | | |||||||||||| ||||||||||| || ||| || || || || Sbjct 517 AGAAATTCCAGATAAATGTAAACTAAAAATTGCTAAATCTACCGAAGGACCTGAATGTGC 458 Query 371505 TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 | ||| | ||| || || ||||| || || || |||| Sbjct 457 TTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 417 >seq3420 Length=11708 Score = 127 bits (140), Expect = 5e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || || |||||||| || | |||||||| || | || Sbjct 290 ACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGT 231 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || || || ||||||||||| || ||||| || || || ||||| || Sbjct 230 GCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 171 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| ||| ||||| |||||||| | || || || || Sbjct 170 TTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAA 111 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || || || || | || || | || | ||||||| Sbjct 110 CGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2330 Length=206 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| |||| |||||||| || | ||| | || |||||||| || || ||| Sbjct 10 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCA 69 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| ||| Sbjct 70 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 129 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| ||||| || | || || || || ||||| ||||| || || | ||| Sbjct 130 ACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 189 Query 225697 TT 225698 || Sbjct 190 TT 191 >seq9 Length=975 Score = 123 bits (136), Expect = 6e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 503 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 444 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAA 7845 | | || |||||| || |||||| ||| ||||||||| ||||| | ||||| ||| Sbjct 443 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTTGCGATCGTACTTTTCAGGCGGAG 384 Query 7846 T-ATTTACGCGTTAGCTTAATTAATATAAAAA 7876 | || ||||||||||| ||| || |||||| Sbjct 383 TGCTTAACGCGTTAGCTGTATT-ATCTAAAAA 353 >seq205 Length=853 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 411 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 352 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 351 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 294 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || || |||||| |||||| |||||||||||||||||||||||||||||| | Sbjct 94 GCTCCTTATACTGGTTGTACTATAGGTGAATATTTTAGAGATAATGGTAAACATGCTGTT 153 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| |||||| Sbjct 154 ATTTTTTATGATGATTTATCAAAACAA 180 >seq2230 Length=15872 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| ||||| || | ||| || || | ||||| || || || || | || || | || Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 40 AAATCTGCATT 30 >seq332 Length=271 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||| |||||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 149 AGGTGTCACAAAATTGAGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATGG 90 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 89 TAACATGATGTATAGGGTCTGACAC 65 >seq3673 Length=698 Score = 91.5 bits (100), Expect = 4e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 6769 GAGAGAATGATCAGCCACATTGGGACTGAAAAC-GGCCCAAGTCTTCTAAAAG--GGCAG 6825 || |||| ||||||||||||||||||||| ||| ||||||| || ||||| ||||| Sbjct 605 GAAAGAACGATCAGCCACATTGGGACTGAGAACCGGCCCAAACTTTTTAAAAAAAGGCAG 664 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTG 6859 ||||| |||| || ||||||| ||||||||||| Sbjct 665 CAGTGAGGAATTTTGGACAATGAGCGAAAGCTTG 698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192420287517746