Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1573 221 1e-52 >seq1573 Length=148509 Score = 221 bits (244), Expect = 1e-52 Identities = 600/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Minus Query 4244 ACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTC 4303 || ||||||| |||| ||||| || || || || || || || ||||| |||| Sbjct 118841 ACCAACACCAGATTTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTG 118782 Query 4304 TAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACT 4362 | ||||| | ||||| | ||||| ||||||| |||| || | || | || | Sbjct 118781 CAGAGAAATCATATCCATCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCC 118722 Query 4363 TTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGT 4422 || || | |||||| || || ||||| || || || || | ||| | | | Sbjct 118721 A-AGTGCATGTAACAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAAT 118663 Query 4423 TAATTCCAATTAATCTC-ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 | |||||||||| ||| || || || | | | | ||| |||||||| || | ||| Sbjct 118662 TCATTCCAATTAG-CTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACG 118604 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-A 4540 || || | || || | | || ||| | | |||||||| | || || | | Sbjct 118603 GCGTCGGAAATGATTGCATGAATAGAGCCTTCTGGAAGCTTATTTACCA-GTTTCGAGTA 118545 Query 4541 CAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAA 4600 || | ||| ||||| |||||||| | ||||| || | || || || || || ||||| Sbjct 118544 CATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAA 118485 Query 4601 CGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGA 4660 | ||| ||||| || |||| || || ||||||||||||| | ||||| || || Sbjct 118484 GCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGA 118425 Query 4661 AAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAG-CTGGCTT 4719 || || || ||||| ||||| ||||| ||||| | || | |||||| | ||| Sbjct 118424 GAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT 118365 Query 4720 TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATA 4779 || | | |||||| || ||||| | ||||| || |||||||||| ||||| | | Sbjct 118364 TGGATCGCA-CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAA 118306 Query 4780 TAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 | ||| | ||| | ||||||| ||| |||| || || || || || | || Sbjct 118305 TCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACG 118246 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 ||||| ||| || |||||||||||||| ||||| ||||||||||||||||||| ||||| Sbjct 118245 AATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTT 118186 Query 4900 CTGTTACTTGAACTTCGTTAC--AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTC 4957 | | | ||||| || | | ||| || | | | ||||| || || || || || Sbjct 118185 CGGGGATCTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTGACAATTCCATC 118128 Query 4958 ACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGT-ACTGT--TCGTCAGGCTTAAG 5014 |||||||||||| || ||||| || || ||||||| || | | ||| | || Sbjct 118127 ACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA-- 118070 Query 5015 TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 || ||||| || || | ||||| | |||||| | |||||||| || Sbjct 118069 -TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGC 118011 Query 5075 TTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 || ||||| || ||||| |||||| |||| | || ||||||| || |||||| | Sbjct 118010 CTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCG 117951 Query 5135 GTT 5137 ||| Sbjct 117950 GTT 117948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427011819322247