Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3420 183 6e-41 seq2230 168 1e-36 seq2330 159 7e-34 seq337 147 5e-30 seq623 105 1e-17 seq3284 98.7 2e-15 >seq3420 Length=11708 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||||||| | ||| |||||| || |||||||| || || Sbjct 296 ACCACCACGAAGACGAAGCACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGC 237 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || || || |||||||| || || ||||||| |||||| || ||| || Sbjct 236 AAGCGTGCGACCGTCTTCCAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGG 177 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| || ||||| ||||||| ||||| |||| || || Sbjct 176 AATTCCTTCCTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 117 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | || || || || || || | |||||||| || || |||||| Sbjct 116 TTCCAACGTAATAGTTTTCCCAGTTAGCGTCTTAACAAAAATTTGCATT 68 >seq2230 Length=15872 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || || ||||| ||||| ||||| | |||||| || || || | Sbjct 220 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 161 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 160 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 101 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| || | |||||| || |||||||| || || || || | ||||| |||| Sbjct 100 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 41 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 40 AAATCTGCATT 30 >seq2330 Length=206 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 || ||||| |||||| ||||||||||| || ||||| || || || || ||||||||| Sbjct 4 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGT 63 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || ||||||| |||||| || ||| ||||| || || |||||||| ||||| Sbjct 64 TTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTG 123 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || ||||| ||||||| ||||| |||| || ||||| | |||||| ||||| || || Sbjct 124 GCCTTTACATTATCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTA 183 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | || || || || |||||||| Sbjct 184 AGCGTTTTCACAAAAATCTGCAT 206 >seq337 Length=89777 Score = 147 bits (162), Expect = 5e-30 Identities = 688/1065 (65%), Gaps = 53/1065 (5%) Strand=Plus/Minus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 ||||| |||| |||||||| ||||| | | | ||| || || || ||||| | |||| Sbjct 63771 CAAGTAATTCCTTGTCTTCTCCGGATTGAAATCTCCACTGAATATATTGATTTGCAGTCA 63712 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 || ||||| | |||||||| ||||| |||| |||||| || || |||| || | Sbjct 63711 GATCGAGATGTGCTTCGATGTGATGGAATGCGTTCTGTGCAACATAGGCAAATCGTAAGC 63652 Query 316274 TTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGA 316333 ||||||| ||||| || | || | |||| |||| | || || |||| || || | Sbjct 63651 TTGGATGTTTCCACACAGTTCCACTCGTAGGCTCCACTTCACCAGTCAGCATCTTGATCA 63592 Query 316334 GAGTACTTTTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGC-GATACC 316392 ||| |||||| || || ||| |||| ||| |||| | || |||| | || Sbjct 63591 AGGTAGATTTTCCTGCTCCATTTGGTCCCAACACAGCGATTC--GACTTGACAAGGCACA 63534 Query 316393 TGGG-CATTCACGTTGTCGA-AGACCAGTTTGTC-CGTCCCAGGATACTTGAA--ACCCA 316447 | | || | || || |||| ||||||| ||||| |||||| || | | | | Sbjct 63533 AGTGACAGAGATATTACTGATAGACG-GTTTGTCTCGTCC-AGGATAAGTGTATGAGCAA 63476 Query 316448 CCCCGC-GAAGCTTCATGATGGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGG 316504 | | || | | || ||| || | ||| ||||| | | ||||| || | Sbjct 63475 TTCGTCAGACGGATAAT--TGGTTTACCCTTGTTCT---TGATATCTGCAAGAAAACCCG 63421 Query 316505 GTTCGGGGAATTTCCAC--GTAGTCTTCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTC 316562 |||| || || || | | | | || || | | |||||||||| | || Sbjct 63420 GTTCAGGAAACTTGAAGTGGAATAATGCGGCTT--CCAATTCGTAGTAACTTCTGGCCTC 63363 Query 316563 GGGACGCTTC---TTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTT 316619 || |||| || || || || |||| ||| ||||| ||| |||| ||||| | Sbjct 63362 AGG---CTTCACTTTGACAAACTCTGACAAATTACCTTTGTACGTCTTGAGCTTGCGT-- 63308 Query 316620 GGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATAC 316679 | |||||| || | || ||||| ||| ||| | ||| |||| ||||| ||||| Sbjct 63307 -GCTTCGTAGTGAACAATGTTCGTACAAACATGATCCAAGAATCCAGGGTCGTGGGATAC 63249 Query 316680 AATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGA 316739 ||||| || | |||| || || || ||||| ||||||| |||||| Sbjct 63248 AATCATACTGGTAACGTTGGGTAAATTATTCAAATAGTTTTCCAGCCAGGCGACATTCTT 63189 Query 316740 CACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGC 316799 ||| |||||||| || ||||| ||||| || || | | || | || || ||| || Sbjct 63188 TACATCGAGATGGTTCGTAGGTTCATCAAGAAGCAGAACATCAGCTTGCATCAACATGGC 63129 Query 316800 GCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCGGGGCAGATTG 316859 || ||||| | |||||||||||||| || || || | || | ||| | ||| Sbjct 63128 ACGAGCGAGTTCTAGCTTCATTTTCCATCCACCCGATAAAGATGAGACCGGTAAATGTTG 63069 Query 316860 GCGCTCAACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGAC--CAT 316917 ||| || || || || | || || || || | || ||| || ||| Sbjct 63068 CATTTCATCAGTGAACCCGAC-GCTT---GA-TAAAC-------TATCGCGA-ACTTCAT 63022 Query 316918 ---GTGTT--TTCTTTAACTTGGTCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAG 316972 ||| | |||||| | | || ||| ||||| || | || || | | Sbjct 63021 CTCGTGGTACTTCTTTCAACTCTTCATCACAAAACATGAATTCTATGACAGGAAGCATCG 62962 Query 316973 ATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGA 317032 ||| || | | | | ||| || ||| | |||| || || ||| || | ||| | Sbjct 62961 CTTCAGAAGCCTGCAAATTATGTTCGACAAACACAGTCTTTAGCTCATCTTTAGACGGAA 62902 Query 317033 ACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA-CCATTG 317091 | ||||||| || ||||| | || || |||||||| || || || || ||| ||||| Sbjct 62901 ATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACC-GCATCCATTT 62843 Query 317092 GGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGA 317151 || || || |||||||| |||| ||| |||||| | || |||| ||||||||| ||| Sbjct 62842 GGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTTCAGTAGA 62783 Query 317152 ATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||||||| |||| |||||||||||||| ||| || ||| Sbjct 62782 ATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 62738 >seq623 Length=41192 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || | || || ||||||||||||||||||||||| || |||||||| || || Sbjct 13037 ACCACCGCGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGAATGTTGTAATCCGC 12978 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||||||||| ||||| || | ||| |||||||| || Sbjct 12977 TAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 12918 Query 282992 AATACC 282997 |||||| Sbjct 12917 AATACC 12912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| |||||||| || || ||||||| || || | | || || Sbjct 12861 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 12802 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || |||||||| || || |||||||| Sbjct 12801 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 12755 >seq3284 Length=77587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| || | ||||||||||||| ||| Sbjct 66916 AGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGA 66857 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| || || | || || ||||||| | ||| || Sbjct 66856 ATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTAC 66798 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||| || || || || || Sbjct 66797 TTCGAGTGTAATTGTTTTTCC 66777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046641847039386