Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306775.1_202015-10-05] 7,259 sequences; 32,214,895 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3420 109 4e-19 seq2230 109 4e-19 seq2330 87.8 1e-12 >seq3420 Length=11708 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| |||||||| || || || ||||||||||| || || ||| |||| || Sbjct 278 CACCAGATGAAGCGTAGATTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGACCGTCTTC 219 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| || || || || ||||||| ||| |||||||| | ||| | |||||||| || Sbjct 218 CAGTTGTTTACCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 159 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || || |||| |||||| || || Sbjct 158 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAACGTAATAGTTTT 99 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || || |||||||| Sbjct 98 CCCAGTTAGCGTCTTAACAAAAATTTGCAT 69 >seq2230 Length=15872 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||||||||||||||| ||||| || |||| |||| || || || || || ||| Sbjct 218 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 159 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 |||||||| || || | ||| | |||||||| || |||||| ||||| | | Sbjct 158 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 99 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 || ||||||| ||||| ||||| | || || || || || ||||| ||||| ||||| Sbjct 98 ATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 39 Query 44330 ATTTGCAT 44337 || ||||| Sbjct 38 ATCTGCAT 31 >seq2330 Length=206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || |||||||||||||| || || || |||| || || || || || || ||| Sbjct 16 TCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTACCAGCGAAG 75 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||| ||| |||||||| | ||| | ||||| || || ||||| ||| | | Sbjct 76 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTA 135 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| || || || |||| || || |||||||| || || || ||||| Sbjct 136 TCGATCGTGTCGGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACA 195 Query 44327 AAGATTTGCAT 44337 || || ||||| Sbjct 196 AAAATCTGCAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359958551986803