Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq18 361 6e-95 seq41 156 4e-33 seq7 147 2e-30 seq14 132 5e-26 seq34 116 4e-21 >seq18 Length=978767 Score = 361 bits (400), Expect = 6e-95 Identities = 461/626 (74%), Gaps = 8/626 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || |||||||||| |||||||||| | ||||| || || | ||||| Sbjct 580333 GAGCCGTTCCTTGTCGAGAACCCCAACCGGTTCGTGTTGTTCCCGATCCAGCATGCGGAC 580392 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||| |||||||| || ||||||||| |||||||| | |||||| | ||| || Sbjct 580393 GTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGCCGAGGAACTCGACTTG 580452 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | || | |||||||| ||| |||||||||||| ||||||| ||| Sbjct 580453 GTGCACGATCA-GCGCGACTGGATCAAGTTGTCGGACAACGAGCGCTTCTTCATCACGCA 580511 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGT 116812 ||||||||| || || || || |||||||||||||||||||| || |||| | || | | Sbjct 580512 CGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAAAACCTGGCCATGAAC-T 580570 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || | || ||||| || |||||||||| ||||| || || || || |||||||| Sbjct 580571 TTAGCA-ATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCGCCATC 580629 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 || ||| | ||||||||| |||| ||| |||||||||||| ||| | || Sbjct 580630 GAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACCCGACC 580689 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||| ||| || || ||||||||| || || |||||||||| |||||| | Sbjct 580690 GAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCGTCATGCGCAAGGCCAAC 580749 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 |||||||| ||| || | || || | ||||| | || ||||||| | || || || Sbjct 580750 TGGGCGCTCAAGTGGTGCGACAACA-AGCGCGCCGCGTACGCCGAGCGCATCGTCGCGTT 580808 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||| ||||| || ||| ||||||| || || ||| | |||| |||||||||||||| Sbjct 580809 CGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATCTTTTGGCTCAAGAA 580868 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 ||||| |||||||| |||||| | ||| ||||| |||||||| | ||||| || || Sbjct 580869 GCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCGACGAAGGCCT 580928 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGT 117197 ||| ||||||||||| || ||| ||| Sbjct 580929 GCACTGCGACTTTGCATGCTTGATGT 580954 >seq41 Length=515451 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || ||||||||||| ||||| ||||||| || || | Sbjct 382127 ATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCG 382068 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || || ||||| | || || Sbjct 382067 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 382009 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||||| || || ||||| |||| |||||||| | ||| ||||| Sbjct 382008 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 381949 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||| | ||||||||| | | ||||| Sbjct 381948 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGG 381901 >seq7 Length=1798773 Score = 147 bits (162), Expect = 2e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | ||||| || |||||||| ||||||| ||| | || Sbjct 108713 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 108772 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| | ||| |||| |||| ||||| || ||||| ||| | ||||| Sbjct 108773 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 108831 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 108832 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 108891 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| |||||| |||| || ||| Sbjct 108892 CATCCAAAAGGAGTCCACCCTCCAT 108916 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| |||||||| ||||||| ||| | || Sbjct 108485 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTTCC 108544 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| | ||| |||| |||| ||||| || ||||| ||| | ||||| Sbjct 108545 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 108603 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 108604 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 108663 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| |||| || || Sbjct 108664 CATCCAAAAGGAGTCCACCCTCCA 108687 >seq14 Length=1282488 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | ||||| ||||||||||| | || || ||| | || Sbjct 735056 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 734997 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| |||| || | ||||| || || || ||| ||||||| Sbjct 734996 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCA 734938 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || ||||| || |||| |||| ||||| | | |||||||| Sbjct 734937 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAA 734878 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||| ||||| | ||| |||| || ||| | ||| || | || || ||| Sbjct 734877 CATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGGGGGC 734826 >seq34 Length=561022 Score = 116 bits (128), Expect = 4e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || || || |||||||| | ||||| ||| Sbjct 36112 GAAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAAC 36171 Query 40745 CCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | ||||| | || |||| ||||| |||| || | ||||| || |||||||| | Sbjct 36172 CGTCCGACTCGATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCT 36230 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| || ||||| || |||| || | |||||| | | |||| Sbjct 36231 GACCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGAC 36290 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||| ||||| | ||| |||| | ||| | ||| || | || || || Sbjct 36291 TACAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGTGG 36346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213822399600