Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq41 125 8e-24 seq14 114 1e-20 seq7 114 1e-20 seq34 96.9 4e-15 seq91 93.3 5e-14 seq67 89.7 6e-13 seq18 89.7 6e-13 seq412 87.8 2e-12 seq36 87.8 2e-12 seq8 87.8 2e-12 seq20 82.4 9e-11 >seq41 Length=515451 Score = 125 bits (138), Expect = 8e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||||||||| || |||||| || || |||||||| ||| || || || Sbjct 381913 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 381972 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || ||||| || || || ||||| || ||||| || | || | | |||||| Sbjct 381973 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 382032 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| ||||| |||| ||| | | | || ||| | || || |||| ||||| Sbjct 382033 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGAT 382091 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||| || ||||| |||||||||||||| Sbjct 382092 CGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq14 Length=1282488 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| ||| || || || |||| || | ||||| || || || Sbjct 734866 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 734925 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | ||||||||| ||| ||||| || | ||| Sbjct 734926 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTT 734984 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || |||| | ||||||||| | |||||||||||| ||||| | |||||| || Sbjct 734985 GTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGAC 735044 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 735045 GAAGATTTGCAT 735056 >seq7 Length=1798773 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| ||||||||| || ||||| || || || || | Sbjct 108700 ACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCC 108641 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 108640 GTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTT 108581 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| || ||||| || | ||| | | | || |||| | |||||| |||| ||||| Sbjct 108580 GTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGA 108522 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| |||||||| ||||| Sbjct 108521 TGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||||||| || ||||| || || || || |||| || Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| ||||| || || | ||||||||||| | || | || |||||||| Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 43095 ATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || ||||| || | ||| | || || |||| | |||||| |||| ||||||||| || Sbjct 108801 ATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTT 108743 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| | |||||| || ||||||||||| Sbjct 108742 TCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 >seq34 Length=561022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||||| || || || || | ||||||||||| | ||| | || |||||||| Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| ||||| |||| ||| | | | || |||| || |||||| || | ||||||||| | Sbjct 36206 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 36148 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || || | ||||| || || || ||||| ||| Sbjct 36147 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 36113 >seq91 Length=302683 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | | Sbjct 181739 ATGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTA 181798 Query 60114 TACTCACCACTATACTACCGAGGATTGAATA-TATAACTTGAATATTA-CAAT 60164 |||| |||||||||||| ||||||| ||| ||||| |||| | || |||| Sbjct 181799 TACTGACCACTATACTAACGAGGATCATATACGATAACATGAAAAGTAGCAAT 181851 >seq67 Length=395538 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | || Sbjct 96480 TGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTAT 96421 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 96420 ACTGACCACTATACTAACGAGGAT 96397 >seq18 Length=978767 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | || Sbjct 805267 TGAAAAAACATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTAT 805208 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 805207 ACTGACCACTATACTAACGAGGAT 805184 >seq412 Length=4028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 1787 GAAAAAGAATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 1728 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 1727 CTGACCACTATACTAACGAGGAT 1705 >seq36 Length=490657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 77596 GAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 77655 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 77656 CTGACCACTATACTAACGAGGAT 77678 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 131481 GAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 131422 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 131421 CTGACCACTATACTAACGAGGAT 131399 >seq8 Length=1383199 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 1356796 GAAAAACAATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 1356855 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 1356856 CTGACCACTATACTAACGAGGAT 1356878 >seq20 Length=927484 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 543784 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACT 543843 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 543844 ATACTAACGAGGA 543856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811631653800