Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 149 4e-31 seq34 138 7e-28 seq14 125 5e-24 seq41 91.5 1e-13 >seq7 Length=1798773 Score = 149 bits (164), Expect = 4e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || || || |||||||||||| Sbjct 108711 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108652 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| |||| |||||||||||||| || || || | ||||||||||| ||| Sbjct 108651 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108592 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||||||||| | | | | ||||| |||| | ||| ||| Sbjct 108591 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACG 108532 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||||||||| || || |||||||||||||| Sbjct 108531 TCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||||||| ||| ||| |||| |||||||||||||| || || Sbjct 108903 TCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAG 108844 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||||||||| ||| | || |||||||| ||||||||||| | | | Sbjct 108843 ATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTG 108784 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | ||||| |||| | ||| ||||| | ||||||||| || || || | || ||||| Sbjct 108783 TCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACG 108724 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 108723 AAGATTTGCAT 108713 >seq34 Length=561022 Score = 138 bits (152), Expect = 7e-28 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| ||| || || ||| || || |||||||||||| | Sbjct 36343 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 36284 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 | | || ||| | || ||||| |||||||| || || || | ||||||||||| | ||| Sbjct 36283 AAGGTG-CGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGG 36225 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || |||||||| ||||||||||| | | | | ||||| |||| || ||| | Sbjct 36224 G-ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCA 36166 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| ||||||||| || || || | ||| || || || |||||||| Sbjct 36165 CGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq14 Length=1282488 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| || || ||| || || ||||||||||| | Sbjct 734830 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 734889 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| |||| ||||| |||||||| || || ||||| || |||||||| ||| Sbjct 734890 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGA 734949 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||||||||| | | | | ||||| |||| | ||| || Sbjct 734950 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACA 735009 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||||||| || || | || || || ||||| ||||| Sbjct 735010 TCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq41 Length=515451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || ||||| || | || || ||||| |||||||| ||| | Sbjct 381901 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 381960 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| ||||| || || || ||||| || ||||| || || Sbjct 381961 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 382020 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||||||||| | | | | ||||| || | | || ||| Sbjct 382021 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACG 382080 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| |||||||| || || || || |||||||| |||||| Sbjct 382081 TCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCATC 382128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068712237600