Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq18 122 2e-22 seq50 102 2e-16 >seq18 Length=978767 Score = 122 bits (134), Expect = 2e-22 Identities = 234/338 (69%), Gaps = 18/338 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || ||||| ||| ||||||| ||||| ||||||||||| || || ||| | || Sbjct 310772 CTTCCGCACTTGCTCTTCTACGGTCCGCCCGGGACAGGCAAGACATCTACGATCATTGCC 310831 Query 254061 CTGGCCCGAACCCTGTTGGG---CGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 |||| || |||| || | || | || | ||| | || |||||||| Sbjct 310832 GTGGCACGTGAGTTGTTTGGTCCCAAGTTCCGCGAGAACGGTCGCTTCCTGGAGCTGAAT 310891 Query 254118 GCTTCTGACGAACGCGGG--TTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC-AAG 254174 || || ||||| ||||| || || || | || || ||| ||||| | ||| || ||| Sbjct 310892 GCGTCAGACGACCGCGGCATTTCGA--TCATTCGGGAAAAGGTCAAGTCGTTCGCCCAAG 310949 Query 254175 ATGTCGATTTC---GTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 | |||| || ||||| | ||| || | || |||||| || | | |||||| Sbjct 310950 GCG-CGATCTCTGGGTCGTCC--ACCATGC----CCCCGTTCAAGATCATCGTGCTGGAC 311002 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 || || || |||||||| |||||||||||| || ||||| || | |||||| | || Sbjct 311003 GAAGCCGATTCCATGACGAACGACGCGCAGTCGGCGCTCCGTCGCATGATGGAAAACTAC 311062 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT 254329 ||| |||||||| || ||||| | || |||||||| Sbjct 311063 TCCAAGGTGACGCGGTTCTGCCTCATTTGTAACTACGT 311100 >seq50 Length=486813 Score = 102 bits (112), Expect = 2e-16 Identities = 118/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 ||||| || | ||||| ||||| |||||||| ||||| |||||||||||| | | | Sbjct 156347 ATCGCGCACCGACTCTGGATCGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 156406 Query 115462 AACCGCGTCGTGCTCGAGTAAACA--TCCATGATCCGTCGCAGCGCCTGGAAAGCACCAG 115519 |||||||||||||| |||||| |||||| |||| || ||||| || || | | Sbjct 156407 AACCGCGTCGTGCT--GCTAAACACTTCCATGGTCCGACGGAGCGCTTGCTGCGCCGCTG 156464 Query 115520 GTGTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| || ||||| || | |||||||| Sbjct 156465 TCGTCATCGAGTCGGCTTCGTCTAGGATCACAATCTT 156501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073754912377280