Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18 141 1e-28 >seq18 Length=978767 Score = 141 bits (156), Expect = 1e-28 Identities = 297/440 (68%), Gaps = 7/440 (2%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||| ||||| || ||||||||||| || ||||| | || | |||||| || | Sbjct 580954 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 580895 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||| || || ||||| || || ||||| || |||||||| ||||| ||| || |||| Sbjct 580894 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGG 580835 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 33750 | |||||||| ||||| || || || || || | | | ||| | || |||||| Sbjct 580834 AGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCT 580775 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| | |||||| | ||||| | |||||| | || || || || ||||| | Sbjct 580774 TGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGA 580715 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | | || || || | || || | || || ||||| | || Sbjct 580714 TGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCG 580655 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| |||||| || |||||||| ||||| || || || || || || |||| |||| Sbjct 580654 AGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCT 580595 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCATC 33988 ||| | |||||||| | | ||| |||| || | ||||| || || || || || Sbjct 580594 CGGGGACTTGCACTTCATTGCTAAA--GTTCATGGCCAGGTTTTCGTTGACGATGCCGTC 580537 Query 33989 ACTGGCTGCAAAAAACGCCA 34008 || || ||||| ||||||| Sbjct 580536 GCTCGCAGCAAAGAACGCCA 580517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811026278800