Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq41 122 9e-23 seq7 105 7e-18 seq2 82.4 8e-11 >seq41 Length=515451 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || || || | || ||||| || || ||||| ||||||||| Sbjct 381901 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 381960 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || || ||| |||| || ||||||||||| ||||| Sbjct 381961 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 382020 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | | || | | ||| | |||||| || Sbjct 382021 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACG 382080 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| ||||| |||| || || || || |||||||| Sbjct 382081 TCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq7 Length=1798773 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 108712 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCT 108653 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| | ||| || |||||| |||||| ||| ||||| || || || Sbjct 108652 GAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 108593 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| || ||||| || | | || | | ||||| || ||||| Sbjct 108592 AATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCAC 108533 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | || || || || || ||||| Sbjct 108532 GTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq2 Length=2059303 Score = 82.4 bits (90), Expect = 8e-11 Identities = 219/332 (66%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 154059 ATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCG--CCTTTACGCTTGCC---GC 154113 |||||| |||||| || |||| ||| | || || || || || ||||| || || Sbjct 917942 ATGTCGGCATGCCAAGGCTCCAAGTACATGGC--GAACGACCCCTTGCGCTTTCCCCCGC 917999 Query 154114 CCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGG 154173 | || | |||| || | | | |||||| |||||||||||||| | | ||| ||| Sbjct 918000 CTTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGG 918059 Query 154174 CGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATC 154233 || ||||| || ||| | ||||||| | | || | | ||| | ||| | | Sbjct 918060 AGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 918119 Query 154234 CAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCAC 154293 |||| ||||| | ||||| || || || | |||||||||| |||||||| Sbjct 918120 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 918179 Query 154294 GAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGC 154353 ||| |||| | ||||| ||| ||||| || || || || ||| || |||| Sbjct 918180 CGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGC 918239 Query 154354 CGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385 |||| |||| ||||||| | ||||| ||| Sbjct 918240 CGGCGTTGAACAAGGTCGGGGTCGCGTGGGTG 918271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058822332000