Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 161 1e-34 seq2 105 1e-17 seq19 93.3 6e-14 >seq18 Length=978767 Score = 161 bits (178), Expect = 1e-34 Identities = 573/878 (65%), Gaps = 58/878 (7%) Strand=Plus/Plus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 ||| | |||||||||||||| || || |||| ||| ||||| | ||| || |||| Sbjct 580390 GACGTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGCCGAGGAACTCGAC 580449 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || | || | | ||| ||| | ||| | || | ||||| || || Sbjct 580450 TTGGTGCACGATCAGCGCGACTGGATCAAG---TTGTCGGACAACGAGCGCTTCTTCATC 580506 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 ||||| | |||| |||||||| | ||| || ||||||||||| || ||| | || Sbjct 580507 ACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAAAACCTG--GCCA 580564 Query 125196 CGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 || | | ||| || || | || |||| | |||||||| || ||||||||| Sbjct 580565 TGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCG 580624 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 || || ||| | ||||||||| ||||||| || || |||| ||||| || | Sbjct 580625 CCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACC 580684 Query 125314 CGCAACGTAAA----CACATGCTCTTTAACGCAATCGACACGGTGCCGTCT---ATACGT 125366 || | || || | | |||| ||| ||||| || | |||| || || Sbjct 580685 CG-ACCGAGAAGGACCGCGTGCTGCG---CGCCATCGAAACCATTCCGTGCGTCATGCGC 580740 Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTACGCCGAC 125423 || ||| | |||| | | |||| ||| | ||||| | |||||||||| Sbjct 580741 AA---GGCCAACTGGGCGCTCAAGTGGTGCGA---CAACAAGCGCGCCGCGTACGCCGAG 580794 Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCAT 125482 | | || || ||||||||||| || ||||||||||| | ||| | ||| ||| |||| Sbjct 580795 CGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC-TCCAT 580853 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||||||||||||||||||||| |||||||| || ||| || | ||||| | || || Sbjct 580854 CTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTC 580913 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTC-TACTGT-TTCGCAACTATCTGCGT 125600 || ||||| ||||| ||||| ||||||| ||| | | ||| ||| | || ||| Sbjct 580914 GCGCGACGAAGGCCTGCACTGCGACTTTG-CATGCTTGATGTACTCGAAGCT-----CGT 580967 Query 125601 CCCGAGTGCAGATCCAGCGAT--GAAAAGGTCATCAAC---ATTGTAACCGATGCCGTGA 125655 | | | ||| | || | | |||| || ||||| ||||||||| Sbjct 580968 C----------AACAAGCTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTG 581017 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 ||| || | ||||| | | ||| | | || || | ||||||||||||| Sbjct 581018 AGATCGAGAAGCAGTTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGG 581077 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG-- 125773 ||| |||||||| ||||| ||||| || ||||| || || ||| | | |||| Sbjct 581078 CGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCT---CGAATCGCTTGGCG 581134 Query 125774 -CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || |||| | | |||||||| |||||||| | ||| || || ||| | | | Sbjct 581135 CCCCCAAGCTCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAG 581194 Query 125833 GTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||||||||||||||||| || |||||||| Sbjct 581195 GCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTAC 581232 >seq2 Length=2059303 Score = 105 bits (116), Expect = 1e-17 Identities = 273/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Minus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | |||||||| || || | ||| | || ||| ||||||||||||||||| | Sbjct 917834 CGTGCCCGCGACTTGTTCTACGCCATGTGGATTCCGGATCTGTTCATGAAGCGCGTCGA- 917776 Query 97044 GACG-GTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | || ||| |||||||| | | || ||| | | || || ||| ||| ||||| Sbjct 917775 GTCGAACGGCGACTGGAGCTTGTTCTGTCCCAATGAAGCGCCGGGGCTGCACGAATGCTG 917716 Query 97103 GGGCGAAGAGTTTGAGGCCAAGT---ACACGGCCTACGAGCAAGAGGGCCGATACGTG-- 97157 ||||| ||||| ||||| || ||| | |||||| || ||||| | || | Sbjct 917715 GGGCGCCGAGTTCGAGGCGCTGTTCCACAAG---TACGAGTCGGAAGGCCG-TGCGCGCA 917660 Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 |||||| || | || | | ||||| |||||| || | | || || || || || Sbjct 917659 AGACGA-TCAAGGCGCAGCAGTTGTGGTTCGCCATCTTGGAGTCGCAAGTCGAAACCGGC 917601 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGG 97276 || |||||||| || ||||||||| |||| || |||| |||||| | || |||| Sbjct 917600 ACGCCGTACATGCTGTACAAGGAT-GCGTGCAACGGCAAGTCCAACCAGCAGAACCTGGG 917542 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336 ||| |||||| ||||| ||||| || || | |||||| | |||||| Sbjct 917541 CACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGAGTACACGAGCAAGGACGAAGT 917482 Query 97337 GGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAG 97382 ||| || ||| |||| || || ||| |||||||||| ||| Sbjct 917481 GGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCCAAGTTTGTCGAG 917436 >seq19 Length=952423 Score = 93.3 bits (102), Expect = 6e-14 Identities = 506/798 (63%), Gaps = 56/798 (7%) Strand=Plus/Plus Query 127012 ATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAAC 127071 |||||| ||||||| || || || ||| | ||| || || ||||| || || || ||| Sbjct 817228 ATTGCG-TGGCGATGGCGGCGATTTGGTGCTCGTGGGGGCCGCCTTGGAGACCGGGGAAC 817286 Query 127072 ACGGCTCGTTCAATTTCCTGCTCTA-GTGAT--------TTGCGGTAAAAGATGACTCCG 127122 |||||| | | || | || | || | |||||||||||||| | ||| Sbjct 817287 ACGGCTTGGTTGATCTTGACTTCAAAGTTACGCGCGTCCTTGCGGTAAAAGATCATGCCG 817346 Query 127123 GCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAG 127182 || || || || | ||| | |||||| || || || || || ||||| || |||| || Sbjct 817347 GCACGGGGGCCGCGGAGGGACTTGTGGGTAGTGGTCGTGACGATGTCGCAGAACTCGAAC 817406 Query 127183 GGGCCAGGAATGA-CTTTGCCCGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAG 127241 ||| | | || | ||| || | |||||| | ||| || || ||| ||| || Sbjct 817407 GGGTC-GTTGTGCTCCTTGGTGGCCACCAAGCCAGAGTAGTGGGCCATGTCGCACATGAG 817465 Query 127242 CAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA-TAGTCCAAGCGCCGAGGAT 127300 ||| |||||| | || || |||| ||||| || | |||||| || || || | Sbjct 817466 CAACGAGCCGTTGTCGTCAGCGATCTTGCGGAA-CGCAGAGTAGTCCCAGTCACGGGGGT 817524 Query 127301 AGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTT 127360 | || ||| | ||| || || ||||| || |||| ||||| | | Sbjct 817525 ACGCGCTACCACCGCACACGATGAGAGCGGGCTTGAAGAGGCTGGCGGATTCGGCCAACT 817584 Query 127361 TGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGA 127420 | | |||| | || || || | || | ||| |||||||| ||||||||| | | Sbjct 817585 TATCGAAGTCAATCAGACCGGTTTCGGGGTGCACGCGGTACGGCAAGCTTTCGAAGTACA 817644 Query 127421 GTGATGTAGCGGACACG---TTGCGG---------------------------AATCCGT 127450 || || || |||||| |||||| || |||| Sbjct 817645 CGGACGTGGCAGACACGGCCTTGCGGGTGTTCTCGGCCTTGCTGTACGTGTAGAAACCGT 817704 Query 127451 GCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT-AACG 127509 | |||| ||||||||| ||||| || | |||||||| | | || || ||| Sbjct 817705 GGGTCAAGTGGCCTCCACTGGGCAAGTCCAAGCCCATGATGCGGTCATGAGGACGCAACA 817764 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 || || |||||||||||||||||||| ||||| |||||||| || || ||| ||| Sbjct 817765 ATGCC-GTGTACACGGCAAAGTTGGCGGGGGAGCCAGAGTACGGCTGGACGTTCACGCCC 817823 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTG-CTGTGC-TAGCAGTTCGA 127627 ||||||| |||||| | ||||| || | | ||| | || || ||| | |||| Sbjct 817824 CATTCGGCAGGGTTCAACCCGTACGCT-TG-CAAAGCGCGGTCTTGGCAGAGCTGCTCGA 817881 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTATCGCT--TTCCGGGCCTA-CCCTCCGAGT 127684 | | ||||| | ||||| || || ||||| || | ||| | || || || | || Sbjct 817882 TTTGGTCGATCACTTCGTTCCCGCCGTAGTAGCGTTGGTTC---ACGTAGCCTTCGGCGT 817938 Query 127685 ACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCG 127744 |||||||| | | ||||| | || ||| || || | | | || |||||||| | Sbjct 817939 ACTTGTTGGTCAAGCACGAGCCCAAGCAGTCCATGACGGCGCGGGACGTGAAGTTTTCAG 817998 Query 127745 ATGCGATCAACTCTAAGC 127762 | ||||| | || |||| Sbjct 817999 ACGCGATGAGTTCCAAGC 818016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051465194600