Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq41 109 4e-19 seq34 98.7 6e-16 seq14 98.7 6e-16 >seq41 Length=515451 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | |||||||||||||||| |||||||| || || || |||||||| Sbjct 381900 ACCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCT 381959 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | ||| |||| ||||||||| ||| || | |||||||| || | || Sbjct 381960 CAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGG 382019 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| || || || | | |||| ||| ||| | ||| Sbjct 382020 GATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAAC 382079 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| ||||| |||||||| ||||| || || || || || |||||||| Sbjct 382080 GTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq34 Length=561022 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||| ||||| || ||||| || ||||| || ||| || | || || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| || ||| || || || |||||||| | || |||||||| || || Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| || || || | | ||||| |||| |||| ||||||| || || || || Sbjct 36206 GATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTT 36147 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||| || |||||||| ||||| ||| Sbjct 36146 CCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 36113 >seq14 Length=1282488 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33167 TGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGC 33226 ||||| ||||| || ||||| || ||||| ||| ||| || | ||| ||||||||| Sbjct 734854 TGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGC 734913 Query 33227 TTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCC 33286 || || ||| || | ||||||||||||| ||| || ||||| || || ||| Sbjct 734914 TTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTT 734973 Query 33287 TGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTA 33346 || || || | | |||| |||| |||| || |||| || || ||||| ||||| Sbjct 734974 TGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTC 735033 Query 33347 AGAGTTTTTACGAAAATTTGCATG 33370 | || || ||||| ||||||||| Sbjct 735034 AACGTCTTGACGAAGATTTGCATG 735057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774355939830