Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq34 104 2e-17 seq14 89.7 4e-13 seq41 82.4 6e-11 >seq34 Length=561022 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || | || ||||| ||||| |||||||| |||| || || |||||| Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATC-GACGGGCACGCCTTCTTTGTCGG 20117 |||||| ||||| ||| | || | | ||| || || | |||| | |||||| ||||| Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG-ATGCCTTCCTTGTCTT 36208 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 || ||||| || || | | ||| || ||| |||||| |||| || ||||| | Sbjct 36207 GGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 36148 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTAAAC 20216 | || ||||| || ||||| ||||| ||||| ||| ||| Sbjct 36147 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCAAC 36109 >seq14 Length=1282488 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || ||||| ||||| |||||||| || | || || ||||||||||| ||||| Sbjct 734860 GTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCG 734919 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| | || || | || || || ||| | ||||| ||||| || ||||| ||| Sbjct 734920 GCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTC 734979 Query 20132 ACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 || | | | | || ||| |||||| |||| || |||||||| || |||||||| Sbjct 734980 ACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTC 735039 Query 20192 TTGACAAAAATTTGCAT 20208 ||||| || |||||||| Sbjct 735040 TTGACGAAGATTTGCAT 735056 >seq41 Length=515451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||||||||| || || || || || || ||||||||||||| || || | || Sbjct 381915 CAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTC 381974 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||| || |||||| | || || | || ||||| || | ||||| ||||| Sbjct 381975 TTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTC 382034 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || ||||| || || | | | | || || || || || | || || || Sbjct 382035 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGT 382094 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| |||| || |||||||| |||||||| Sbjct 382095 TTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419582930044635