Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq41 127 2e-24 seq34 122 8e-23 seq7 111 1e-19 seq14 102 7e-17 >seq41 Length=515451 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||||||||| |||| || || ||||| || | ||| |||||||||| ||| Sbjct 381913 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 381972 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| || ||||| ||||||| | | ||||||||| ||||| || ||||| ||| Sbjct 381973 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 382032 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || ||| ||||||| | ||| | ||| | | | || ||||| | ||||| Sbjct 382033 TCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATC 382092 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || |||||||| ||||| Sbjct 382093 GTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq34 Length=561022 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || ||||||||||| | ||| || ||||||| ||| | ||| || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| ||||||| || | ||||| || || || || ||||| ||||| | Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||||||| | | | | ||| | | || ||||| | ||||||||| || Sbjct 36206 GATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTT 36147 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || || || |||||||| Sbjct 36146 CCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq7 Length=1798773 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | ||| || ||||| | ||| | || || Sbjct 108694 CACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTC 108635 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || ||||||| || | ||||| || || ||||| ||||| ||||| | Sbjct 108634 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 108575 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||| ||| | | | | ||| | | || ||||| | ||||||||| || Sbjct 108574 AATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTT 108515 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || ||||||||||||||| Sbjct 108514 GCCGGTGAGGGTCTTGACAAAGATCTGCATG 108484 >seq14 Length=1282488 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | |||||| || ||||||||||| | ||| || || |||| ||| | || || Sbjct 734847 CACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTC 734906 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| ||||||| | | |||||| || || ||||| ||||| ||||| | Sbjct 734907 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTG 734966 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||| ||| ||| | ||| | ||| | | || || || | |||||||||||| Sbjct 734967 GATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTT 735026 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || | || || || ||||| |||||| Sbjct 735027 CCCCGTCAACGTCTTGACGAAGATTTGCATG 735057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286520960600