Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 192 9e-45 seq26 190 3e-44 seq7 179 6e-41 seq170 172 9e-39 >seq6 Length=1791376 Score = 192 bits (212), Expect = 9e-45 Identities = 206/270 (76%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||| ||||||||||| || || Sbjct 521383 GCCAAGCGCCATCGCAAGGTC-CTTCGCGACAACATCCAAGGTATCACCAAGCCTGCCAT 521441 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| || ||||||||| ||||||| ||| |||| ||||| | Sbjct 521442 CCGCCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGTTTGATCTACGAAGAAAC 521501 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| |||| | || ||| || || Sbjct 521502 CCGCGGTGTGCTCAAGGTGTTCTTGGAAAACGTCATCCGTGATTCCGTCACCTACACTGA 521561 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || ||||| || ||||| Sbjct 521562 ACACGCTCGCCGAAAGACCGTCACGGCCATGGACGTCGTGTACGCTTTGAAGCGCCAAGG 521621 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 ||| | | || ||||| ||| ||||||| Sbjct 521622 CCGCACCTTGTACGGTTTCGGAGGTTAATC 521651 >seq26 Length=682476 Score = 190 bits (210), Expect = 3e-44 Identities = 205/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || ||||| |||||||||||||| ||||||||||| |||| Sbjct 329325 CGCCAAGCGCCATCGCAAGGTC-CTTCGCGATAACATCCAAGGGATCACCAAGCCCGCTA 329267 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||||||||| || ||||||||| ||||||| ||| |||| ||||| | Sbjct 329266 TCCGTCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAA 329207 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||| | | | ||| |||| ||| | || ||| || | Sbjct 329206 CCCGCGGTGTGCTTAAGGTGTTCTTGGAAAACGTCATCCGCGATTCCGTCACCTACACTG 329147 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||| || ||||| || || ||||||| |||| || || ||||| || |||| Sbjct 329146 AACACGCTCGCCGAAAGACCGTGACGGCCATGGACGTCGTGTACGCTTTGAAGCGCCAAG 329087 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 329086 GCCGCACCCTGTACGGTTTCGGCGGTTAA 329058 >seq7 Length=1798773 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||| Sbjct 1314372 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGGATCACCAAGCCCGCTAT 1314314 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || ||||||||| |||| || ||| |||| ||||| | Sbjct 1314313 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTTTGATCTACGAAGAAAC 1314254 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||| | | | ||| |||| || | | || ||||| Sbjct 1314253 TCGTGGCGTCCTCAAGGTGTTCTTGGAAAACGTCATCCGCGACTCCGTGACGTACACCGA 1314194 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| |||||||| |||| || || ||||| || ||||| Sbjct 1314193 ACACGCTCGCCGAAAGACCGTCACGGCCATGGATGTCGTGTACGCTTTGAAGCGCCAAGG 1314134 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 1314133 CCGCACCTTGTACGGTTTCGGCGGTTAA 1314106 >seq170 Length=31143 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 14362 CGCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAAGGGATCACCAAGCCCGCCAT 14303 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| ||||||| ||| |||||||||| | Sbjct 14302 CCGCCGTCTAGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGCTTGATCTATGAAGAAAC 14243 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||| | | | ||| |||| ||| | || || || || Sbjct 14242 CCGCGGCGTGCTCAAGGTGTTCTTGGAAAACGTCATCCGCGATTCCGTCACGTACACTGA 14183 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || ||||| || || ||||||| | || ||||| ||||| |||||||| Sbjct 14182 ACATGCTCGCCGAAAGACCGTGACAGCCATGGACGTTGTGTATGCGTTGAAGCGTCAAGG 14123 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || ||||| ||||| Sbjct 14122 CCGTACTTTGTACGGGTTTGGGGGTTAA 14095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074436553655