Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq18 118 1e-21 >seq18 Length=978767 Score = 118 bits (130), Expect = 1e-21 Identities = 405/626 (65%), Gaps = 4/626 (1%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 |||||| ||||| ||||||||| || | |||||||| || || || | || || Sbjct 580956 GTACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGA 580897 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-C 93200 ||| | | || || | || || || |||||||||||||| || || ||| ||| | | Sbjct 580896 GAACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGA-GCAGAACGAAC 580838 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || ||||||||||| || || || || || || ||||| | ||| Sbjct 580837 CGGAGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGC 580778 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || || | ||| || | ||||| | ||| || | | | || || | |||| Sbjct 580777 GCTTGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTT 580718 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 |||| ||| | | | || |||| || || |||||||| ||||| | | Sbjct 580717 CGATGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGA 580658 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || |||| ||| || |||| || || || || |||||||| || || || |||| | Sbjct 580657 GCGAGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCG 580598 Query 93441 CTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 | || | || |||||||| ||| ||| | || | || ||||| ||||| || || Sbjct 580597 CCTCGGGGACTTGCACTTCATTGCTAAAGT-TCATGGCCAGGTTTTCGTTGACGATGCCG 580539 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||| || ||||| || |||| | ||| | || || ||| | || | | Sbjct 580538 TCGCTCGCAGCAAAGAACGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGACAAC 580479 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 || ||| ||| |||| | | |||| ||| ||| ||||||| || || Sbjct 580478 TTGATCCAGTCGCGCTGATCGTGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGCC 580419 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || ||||| |||||||| ||||| | ||| || || || || || | || || || Sbjct 580418 TCGGCTTTCTTGTACATTTCCCACACGTCCGCATGCTGGATCGGGAACAACACGAACCGG 580359 Query 93680 TTAGGGTTATCTTTTAGTAACGGCTC 93705 || ||||| || || |||||||| Sbjct 580358 TTGGGGTTCTCGACAAGGAACGGCTC 580333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854987765400