Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7 134 1e-26 seq34 122 7e-23 seq41 116 3e-21 seq14 104 2e-17 seq2 91.5 1e-13 >seq7 Length=1798773 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || |||||| | || Sbjct 108713 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 108772 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| |||||||||||||| || ||||| || || || Sbjct 108773 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 108832 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || || |||||| || ||| |||||| Sbjct 108833 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAAC 108892 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||| || |||||| | ||||| || | || | |||||||||| Sbjct 108893 ATCCAAAAGGAGTCCACCCTCCATTTGGTCCTTCGCCTTCGCGGAGGTT 108941 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || |||||| | || Sbjct 108485 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTTCC 108544 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| |||||||||||||| || ||||| || || || Sbjct 108545 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 108604 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || || |||||| || ||| |||||| Sbjct 108605 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAAC 108664 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || |||||| | || || || | || |||| || || Sbjct 108665 ATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 108711 >seq34 Length=561022 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || || ||||| || || || || |||| | || |||||| | Sbjct 36113 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACC 36172 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| | | ||| | |||| ||||| || ||||||||||| || || || || || Sbjct 36173 GTCCGACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGA 36232 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || ||||||||||| || || || ||| ||||||| | ||| || Sbjct 36233 CCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTA 36292 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| ||||| || | || || || | || ||||||| ||| Sbjct 36293 CAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGT 36344 >seq41 Length=515451 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || || |||||| ||||||| || || || || | Sbjct 382128 GATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTC 382069 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | | ||| | |||| ||||| || || |||||||| || || || || ||||| Sbjct 382068 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 382009 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || || | || || |||||| | ||||||||| Sbjct 382008 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 381949 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || || ||| | ||||| || ||||| | || || ||| Sbjct 381948 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGGT 381900 >seq14 Length=1282488 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || ||||| |||| | || |||||| | || Sbjct 735056 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 734997 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| || || |||||||| || ||||| || || || Sbjct 734996 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAG 734937 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| || || || || |||||| | || |||||| Sbjct 734936 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAAC 734877 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 734876 ATCCAAAAGGAATCGAC 734860 >seq2 Length=2059303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/164 (74%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || ||||| ||||| ||||| ||||| ||| ||||||||| || ||| | Sbjct 917458 ATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCGATGATCTCGCAG 917517 Query 129757 CACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACTTTTCATGTTGCA 129812 ||||| || || | || || ||||||| | || || || |||| | |||||| Sbjct 917518 CACAAGTTGGACGACTTG--ATCGTGCCCAGGTTCTGCTGGTTGGACTTGCC--GTTGCA 917573 Query 129813 AGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct 917574 CGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCG 917617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723728611775