Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq26 134 3e-26 seq4 113 9e-20 seq2 102 2e-16 seq256 96.9 7e-15 >seq26 Length=682476 Score = 134 bits (148), Expect = 3e-26 Identities = 445/676 (66%), Gaps = 31/676 (5%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || ||||| || |||||||||||||| | | | |||||||| || || Sbjct 456146 GTGGGGTCGCTCTCGGGGGGATGGAAGATGAAGCTCGAATTGGCCCGCGCCATGCTCATG 456087 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| | | |||| || || || ||||||||| ||||| ||||||| || Sbjct 456086 AAGGCCGACATTTTGTTGCTGGACGAACCGACCAACCACTTGGACGTGGCCAACGTGGCA 456027 Query 279816 TGGCTAGTGTCCTACCT-AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| | | |||||| ||| | | | || || | || || |||| || ||||| Sbjct 456026 TGGCTCGAGAACTACCTGAACAACGCCGGCGAC-GTGACGTCGATCGTTGTGTCGCACGA 455968 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 || || ||||| || ||||||| | |||||| ||||| ||| | || | ||||| Sbjct 455967 TTCGGGGTTCCTCGACAACGTGTGCACCAACATCATCCACTACGAGAAGAACCGCAAGCT 455908 Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | | || | |||||| ||||| || |||| |||||| || || || || Sbjct 455907 CAAGACGTACGTGGGCAACATGTCTCACTTTGTGGAGCTGCGCCCGGAAGCCAAGGCGTA 455848 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTC-TGGAGG 280053 ||| ||||| ||| ||||| | || | ||||||||||| ||||||| ||| | Sbjct 455847 CTACAACCTGGAGGCGGCCACGTTCGCGTTCAAGTTCCCTGAGCC-GGGTTTCTTGGCCG 455789 Query 280054 GCATC-ACATCAAAGGATCGCGCA--AT---CATGAA-----GCTCCGTGGCGTCTCCTT 280102 |||| | | ||| || || || || |||||| ||| ||| | || | Sbjct 455788 ACATCAAGAACAAGGGCAAGCCCATCATCCGCATGAACAACTGCT-CGTACCAGTACCCT 455730 Query 280103 TGCTTATCCCAATGGCC--CCAACATCTTCAGCAGTGTCAACT-CGCAGGTTTCTATGAA 280159 || || | ||| | | || | || || ||| | ||| | | || Sbjct 455729 GGCACGACCAA---GCCGTCGATCAACAACATCACGATCACGTGCGC-GCTGTC------ 455680 Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 || || |||| || || || ||||| || || || ||||| ||| | ||||| | | Sbjct 455679 GTCGCGCATTGCCGTGATCGGGCCCAACGGCGCCGGCAAGTCGACCATGATCAAGATGTT 455620 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||| ||||| || | || || ||| || | ||||||||||| |||||| | | Sbjct 455619 GACGGGCGAAGTGGAGCCGAC-GACCGGTACCATGTGGAAGCATCCGTCCATGCGCTTTG 455561 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||||| || ||||| || ||||| |||||||| | ||| ||||| |||| | |||| Sbjct 455560 CGTACGTGGCGCAGCATGCGTTCCATCACATCGAAGAGCACTTGGACTTGACGGCCAACC 455501 Query 280339 AATACATTCAGTGGCG 280354 | ||||| || ||||| Sbjct 455500 AGTACATCCAATGGCG 455485 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || |||| ||||| || ||||||||||| || ||||| | ||| ||||| || Sbjct 456497 GGTGAAGACTTGTGCGACTGCGAGTTCTCGCTCGCGTACGGTGGCATGATCCTGCTCAA- 456439 Query 279405 TCTACCCGCCTCAACA--TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 | || ||| || || ||||| ||| ||||||| || | || ||||| || | Sbjct 456438 -CAACGCGCGTCTGCAGCTCAAGAAGGGCCACCGGTACGGGTTGTGTGGCCCCAACGGCG 456380 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || ||| || || |||||||| || || ||||| ||| ||||||| || || Sbjct 456379 CCGGCAAGTCGACGCTCATGCGCGCGATCGCGAACGGCCAGTTGGAAGGGTTCCC 456325 >seq4 Length=1887962 Score = 113 bits (124), Expect = 9e-20 Identities = 211/310 (68%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 |||| || || ||||| || | || || || | || || ||| | |||||||||| Sbjct 1154532 AAGAGATCAAAGTCGCGCAACTGTCGGGGTACATTTCAGAGCATTCAGCGTACCATCACG 1154473 Query 218708 GTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 | || || ||| || || |||| | |||||||| || ||| || || || |||| Sbjct 1154472 GCGAAGTGAATCTCCACGGCACCATCATCGGCATGGCCCAAAACTTCGTTGGAAGCAACA 1154413 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATA 218827 |||| ||||||||| |||||||| |||||||| | || || |||| || |||||| Sbjct 1154412 ACATCAACTTGCTGGCACCCAACGGCCAGTTTGGGACGCGACTCATGGGGGGCAAGGATG 1154353 Query 218828 GTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC 218887 || ||| | ||| | |||||||| ||| | | || |||| || ||||||| Sbjct 1154352 CCGCCAGTGCTCGTTATGTGTTTACAAACTTGGAGTATATCACCCGCCTTGTCTTCAATC 1154293 Query 218888 AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGT 218947 | || |||| || | || || || || ||||| || || ||||| ||| ||| Sbjct 1154292 CGTTGGACGATGCCATCTTGAACTACCTGGAAGACGAAGGCCAGTCCATTGAACCCCAGT 1154233 Query 218948 GGTATGTGCC 218957 |||| |||| Sbjct 1154232 GGTACATGCC 1154223 >seq2 Length=2059303 Score = 102 bits (112), Expect = 2e-16 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 3749 GAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 3690 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 3689 GAGCCCCAC 3681 >seq256 Length=14964 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| || || || ||||| || || || ||||| ||| | ||||| | || Sbjct 7637 TCGCGCATTGCCGTGATCGGGCCCAACGGCGCCGGCAAGTCGACCATGATCAAGATGTTG 7696 Query 280221 ACTGGCGAGACCCAGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 || ||||| || | || || ||| || | ||||||||||| |||||| | || Sbjct 7697 ACGGGCGAAGTGGAGCCGAC-GACCGGTACCATGTGGAAGCATCCGTCCATGCGCTTTGC 7755 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||||| || ||||| || ||||| |||||||| | ||| ||||| |||| | ||||| Sbjct 7756 GTACGTGGCGCAGCATGCGTTCCATCACATCGAAGAGCACTTGGACTTGACGGCCAACCA 7815 Query 280340 ATACATTCAGTGGCG 280354 ||||| || ||||| Sbjct 7816 GTACATCCAATGGCG 7830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || |||| ||||| || ||||||||||| || ||||| | ||| ||||| || Sbjct 4104 GGTGAAGACTTGTGCGACTGCGAGTTCTCGCTCGCGTACGGTGGCATGATCCTGCTCAA- 4162 Query 279405 TCTACCCGCCTCAACA--TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 | || ||| || || ||||| ||| ||||||| || | || ||||| || | Sbjct 4163 -CAACGCGCGTCTGCAGCTCAAGAAGGGCCACCGGTACGGGTTGTGTGGCCCCAACGGCG 4221 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || ||| || || |||||||| || || ||||| ||| ||||||| || || Sbjct 4222 CCGGCAAGTCGACGCTCATGCGCGCGATCGCGAACGGCCAGTTGGAAGGGTTCCC 4276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825803752235