Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq41 132 4e-26 seq34 116 3e-21 seq7 116 3e-21 >seq41 Length=515451 Score = 132 bits (146), Expect = 4e-26 Identities = 173/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 114146 TTTA-CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 |||| ||| |||||||||| || | ||| || ||||| | || || || || || |||| Sbjct 381890 TTTAGCAACTACCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGT 381949 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||||||||||| || ||| ||||| ||||| || || || ||||||| || || | Sbjct 381950 TGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCT 382009 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 | || ||||| || ||||| ||||| |||||||| || | | || | | ||| | Sbjct 382010 GATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCG 382069 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| | || | ||||||||| ||||| || || ||||| || ||||| Sbjct 382070 AGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq34 Length=561022 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || | ||| ||||| ||||| |||||||| ||||||| || || |||||| Sbjct 36325 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCC 36266 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||| || || || |||| | ||||| ||||| || || |||||||| ||||| Sbjct 36265 AATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 36206 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||||| || | | |||| | ||||| | ||| ||||||| || | || || Sbjct 36205 ATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTC 36146 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| || || ||||||||||| Sbjct 36145 CCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq7 Length=1798773 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || ||||| |||||||| ||| Sbjct 108714 ATGCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCG 108655 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || ||||| | || || ||||| |||| | |||||| ||||| || Sbjct 108654 CTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGG 108595 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||||||| || | | |||| | ||||| | ||| Sbjct 108594 GGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCC 108535 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 ||||| | || | || |||||||| || || || ||||| |||||||||| Sbjct 108534 ACGTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGG 108483 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || || ||||| |||||||| ||||| | || || ||||| Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | || || ||||| |||| | |||||| ||||| || ||||||||||| ||||| | Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||||| || | | |||| | ||||| | ||| ||||| | || | || || Sbjct 108801 ATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTT 108742 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || || || || || |||||| Sbjct 108741 CCCGTCAACGTCTTCACGAAGATTTGCATG 108712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420130124476020