Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 255 1e-62 seq18 253 4e-62 >seq2 Length=2059303 Score = 255 bits (282), Expect = 1e-62 Identities = 865/1336 (65%), Gaps = 61/1336 (5%) Strand=Plus/Plus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||| |||||||| | || | ||| || | | |||||||| ||| ||| Sbjct 916591 AGGTAGTACATACCGGTCTTCAAGCCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGC 916650 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 || | || |||| |||||| | | || ||| | | ||||| ||| Sbjct 916651 TTACTGAT-----GCTT-GGGTCGGCGATGTGCAC------GTTCATGCTTTGGCTTTGG 916698 Query 243896 TCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATAC 243955 || ||| | | || || ||||||| | || | | |||| || ||||| || Sbjct 916699 CAGATGAACGCACCGCGGTCGGCGGCCAAGTCGAGCACGACCTTTTGCTTGATCTCCCAC 916758 Query 243956 GCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCC 244015 | |||||||| | ||||| || | |||||| ||| ||| || || ||| Sbjct 916759 ACAGTCTTGTACACTTCCTTGACGTTCGCGGGGATGGACGCGACGTTTTGAACGCTGCCG 916818 Query 244016 TTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA-GCGCTCCAGCGC 244074 || | || |||| |||| | || ||||||||| |||| | | || ||| | Sbjct 916819 CGGTCATGCAAGATCTGGTTGCGGACGTCGCTGTTCCACAGACCCAGCGAGATC-AGCTC 916877 Query 244075 CTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAG 244134 || | || || | |||| || | || || |||| || |||||||| ||| | Sbjct 916878 CTTCATCAAGTACTTGTTAACGATGGTGAATTCGCCCGCGAGGACGCGGCGGCTGTACAT 916937 Query 244135 GTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGT 244194 |||| | | ||||||||| || ||||||| || |||||||| ||| ||| || Sbjct 916938 GTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGACGCCGT 916997 Query 244195 CGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-----TGCGGAGT 244249 |||||||| | || ||||| ||| | | ||||||| ||| |||| | Sbjct 916998 GGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGC---TGGGCCACTTGCGCCTT 917054 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 |||| ||||||||||| |||| | ||| || |||||||| ||| Sbjct 917055 --GAGCGACGCCCAGTCCCACAGATCCGACGG-------CGT--GACGCCCCACAAGTCG 917103 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 |||| | | |||| || |||||| ||||||||||||| ||| || || | || | Sbjct 917104 TACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGCTC 917163 Query 244370 TGGGCCAGCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 | ||| || || || | | || | |||||||| ||||||||| || |||||| || Sbjct 917164 TTGGCGAG-TTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCTG 917222 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||||| | ||| | | | ||| | | ||||| | ||||| ||||||| Sbjct 917223 GTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGAACGCGTCGGC 917282 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTC 244545 || || || ||||| || ||||| || | ||| ||| ||||| | ||| ||||| Sbjct 917283 AAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGCGC---GCTTC 917339 Query 244546 GGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC 244605 | | ||||||| ||||| ||||||||||||||||||||||| |||| || | | Sbjct 917340 TTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCACCTTGGC 917399 Query 244606 GACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCAC 244665 || | | ||| | |||||| || | || | || ||| || Sbjct 917400 GATCTTGTGCAGGTGTGCAAAGTCAAACAC--AGCGTTC-TCG---------------AC 917441 Query 244666 AAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTA 244725 ||||| | || |||| | |||| |||||| |||||||| || ||| | | ||||| Sbjct 917442 AAACTTGGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTA 917501 Query 244726 CTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGA 244785 || || |||||| ||| | ||| ||||||| |||||||||| ||| || ||||| Sbjct 917502 CTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTGGA 917561 Query 244786 CTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGAC 244845 |||| ||||||| || |||||||| |||||| | ||| ||||| |||| || | | Sbjct 917562 CTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGACTC 917621 Query 244846 GAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTC 244905 | || | | ||| | | | ||||||| |||| |||| || ||| || | ||| Sbjct 917622 CAAGATGGCGAACCACAACTGCTGCGCCTTGATCGTCTTGCGCGCACGGCCTTCCGACTC 917681 Query 244906 GTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGA 244965 ||| | | |||| ||||||||||||| ||||||| |||| | ||| ||| | Sbjct 917682 GTACTTGTGGAACAGCGCCTCGAACTCGGCGCCCCAGCATTCGTGCA-GCCCCGGCGCTT 917740 Query 244966 CGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGG 245024 | ||| || | | ||||| |||||| || ||| | || |||||| || || | Sbjct 917741 CATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCTTCATGAACAGATCCG 917800 Query 245025 GGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCC 245084 | ||||| | ||| | ||| | ||| | || | ||| || ||| ||||||| Sbjct 917801 GAATCCACATGGCGTAGAACAAGTCGCGGGCACGATGCAGTTCATTGCCGTGGTTCTTCT 917860 Query 245085 TCAGCTCCAAAAAGTC 245100 | || ||||| || || Sbjct 917861 TGAGATCCAAGAATTC 917876 >seq18 Length=978767 Score = 253 bits (280), Expect = 4e-62 Identities = 581/869 (67%), Gaps = 23/869 (3%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| |||| |||| | ||| ||||||||||| || || | |||||| || Sbjct 580377 GATCCAGCATGCGGACGTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGC 580436 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC--TGTCTGAGAACGAA 42401 |||||| | ||| ||| | || | || |||| ||| |||| || ||||| Sbjct 580437 CGAGGAACTCGACTTGGTGCACGATCAGCGCGACTGGA--TCAAGTTGTCGGACAACGAG 580494 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| ||| || | ||||| ||||| || || |||||||| ||||| || Sbjct 580495 CGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAA 580554 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||||||| | || | || || ||||| | |||||||| ||||| || || Sbjct 580555 AACCTGGCCATGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGG 580614 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 ||||| || ||||| || ||| | ||||| || |||||| | || || |||| ||| Sbjct 580615 TTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATAC 580674 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| || |||| || | || | ||||| || || || || ||| || Sbjct 580675 ATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCGTC 580734 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | | ||||| ||||||||||||| ||| ||| | ||| ||| || |||| Sbjct 580735 ATGCGCAAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCGCGTACGCCGAG 580794 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | | || || || ||||||| || |||||||||||||| || | ||| ||||||| Sbjct 580795 CGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATC 580854 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||||||| || | | ||||| || || | |||||||||||||||||| Sbjct 580855 TTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCG 580914 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | ||||| || ||||| | |||||||| ||| | ||| ||||| | | ||| || Sbjct 580915 CGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAGCTCGTCA---AC 580971 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| ||| | ||| ||| | || || || ||||| |||||||||||| || Sbjct 580972 AAGCTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAGATCGAGAAGCAG 581031 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || | | || |||||||| || | ||||||||| | ||||||||| | Sbjct 581032 TTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGGCGCTCATGTGCGAA 581091 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 ||||| ||| | |||||| | ||||| | || | | | |||| | | | | Sbjct 581092 TACATTGAGTTCTGCGCCGATCGCCTCCT----CGAATCGCT---TGGCGCCCCCA-AGC 581143 Query 43062 AC------GCC--GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 | ||| | |||||| |||| ||||| | ||||| ||| | ||||| |||| Sbjct 581144 TCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAGGCAAAACCA 581203 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||||||||||||| | ||| ||| Sbjct 581204 ACTTTTTCGAGAAGCGCGTGGGCGAGTAC 581232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944329343459600