Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 136 9e-27 seq34 134 3e-26 seq14 122 2e-22 seq41 114 3e-20 >seq7 Length=1798773 Score = 136 bits (150), Expect = 9e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||| ||||||||| |||||||| || || || || || ||| Sbjct 108675 TCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAG 108616 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | || || ||||| || || || || ||| |||| |||||| Sbjct 108615 ATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTT-CACGTT 108557 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| | ||| || ||||||||||| ||||| ||||| || |||||||| Sbjct 108556 GTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGAC 108497 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 108496 AAAGATCTGCAT 108485 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || | ||| | ||| || |||||||| || |||||| | Sbjct 108939 CCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108880 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| |||||||| || || || || || ||||||| |||||| || | || Sbjct 108879 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108820 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || || || ||| |||| |||||| || || || ||| | ||| || Sbjct 108819 ATGCCTTCCTTGTCTTGAATCTTTTGCTT-CACGTTGTCAATCGAGTCGGAAGGTTCCAC 108761 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 108760 GTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 >seq34 Length=561022 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | || | ||| ||| |||||||| || |||||| Sbjct 36343 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 36284 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| ||||| || || || ||||||| ||||| || | ||| Sbjct 36283 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 36224 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| ||| |||| ||||| || || || ||| || ||| || Sbjct 36223 ATGCCTTCCTTGTCTTGGATCTTTTGCTTG-ACGTTGTCAATCGAGTCGGACGGTTCCAC 36165 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| |||||||| |||| |||||||||||| |||||||| Sbjct 36164 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq14 Length=1282488 Score = 122 bits (134), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| ||| |||||||| || ||||| Sbjct 734830 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 734889 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| |||||||| ||||| || || || ||||| || || || || || ||| Sbjct 734890 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGG---TCCGGG 734946 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || |||||||| ||| |||| |||||| || || || ||| | ||| Sbjct 734947 GGAATCCCTTCCTTGTCCTGGATCTTTTGCTT-CACGTTGTCGATCGAGTCGGATGGTTC 735005 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||| || ||||| |||| ||||||||||| || ||||| Sbjct 735006 CACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq41 Length=515451 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| || ||||| |||||||| | ||| ||||| || ||| Sbjct 381937 TCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAG 381996 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || || || ||| | ||||||||||| || |||||||| ||| || || ||||| Sbjct 381997 ATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTTTGC-TTGACGTT 382055 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || ||||| |||||||| || || ||||| |||||||| Sbjct 382056 GTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGAC 382115 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 382116 AAAGATTTGCAT 382127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641779541130