Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq26 118 2e-21 seq256 105 1e-17 >seq26 Length=682476 Score = 118 bits (130), Expect = 2e-21 Identities = 430/664 (65%), Gaps = 18/664 (3%) Strand=Plus/Plus Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396 ||||||||||||| |||||||||| |||| ||| | || || |||||||| ||||| | Sbjct 455483 AACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAAGTGCTCTTCGATGTGATGGAACG 455542 Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456 ||||||| |||||||| |||| ||||| ||||||||||| | | ||| | || | Sbjct 455543 CATGCTGCGCCACGTACGCAAAGCGCATGGACGGATGCTTCCACATGGTACCGGTCGTCG 455602 Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516 |||| || ||||| | || ||| || | || || || || || || || | Sbjct 455603 GCTCCACTTCGCCCGTCAACATCTTGATCATGGTCGACTTGCCGGCGCCGTTGGGCCCGA 455662 Query 333517 CCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCATTCACGTTGTCAAAGATTAGTTTT 333575 ||| |||| | || ||||| || || | | | ||||| | | || Sbjct 455663 TCACGGCAATGCGCGACGACAGCGCGCACGTGATC-GTGATGTTGTTGATCGACGGCTTG 455721 Query 333576 TCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTC------ATGATGGCACGGTCC 333629 ||| || || |||| | || | | || | ||| ||||||| | || Sbjct 455722 GTCGTGCCAGGGTACTGGTAC----GAGC-AGTTG-TTCATGCGGATGATGGGCTTGCCC 455775 Query 333630 TTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCG 333689 || |||| | | | ||| || ||||| |||||||| ||| | | | | | | Sbjct 455776 TTGTTCTTGATGTCGGCCAAGAAACCCGGCTCAGGGAACTTGAACGCGAACGTGGCCGCC 455835 Query 333690 GTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCC 333749 ||| |||||| | | ||| || ||| || ||| || | |||| || ||| Sbjct 455836 TCCAGGTTGTAGTACGCCTTGGCTTCCGGGCGCAGCTCCACAAAGTGAGACATGTTGCCC 455895 Query 333750 TTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCG 333809 |||| |||| ||||| |||| ||||| ||||| || |||||| || |||| Sbjct 455896 ACGTACGTCTTGAGCTTGCGGTTCTTCTCGTAGTGGATGATGTTGGTGCACACGTTGTCG 455955 Query 333810 AGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTA- 333868 |||||||| || ||||| ||||||| | ||| ||||| |||| ||||||| Sbjct 455956 AGGAACCCCGAATCGTGCGACACAACGATCGACGTCACGTCGCCGGCGTTGTTCAGGTAG 456015 Query 333869 TTCAATC-AGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927 ||| || ||||| |||||| | ||| | ||||||||||| ||||| || | | Sbjct 456016 TTC--TCGAGCCATGCCACGTTGGCCACGTCCAAGTGGTTGGTCGGTTCGTCCAGCAACA 456073 Query 333928 GTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTG 333987 | | || |||| |||||| || || || | |||| ||||| ||||| || || | Sbjct 456074 AAATGTCGGCCTTCATGAGCATGGCGCGGGCCAATTCGAGCTTCATCTTCCATCCCCCCG 456133 Query 333988 AAAG 333991 | || Sbjct 456134 AGAG 456137 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||| |||||| | || |||||||| || || || || || || Sbjct 456322 GACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTGCCGGCG 456381 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| || ||||||| ||||| |||| || ||| || | | |||| ||||| Sbjct 456382 CCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCGTTGTTG 456441 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACT 334358 || || || | ||||| || || || || || || || || |||| || ||||| || Sbjct 456442 AGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCACCCACG 456501 Query 334359 TCT 334361 ||| Sbjct 456502 TCT 456504 >seq256 Length=14964 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396 ||||||||||||| |||||||||| |||| ||| | || || |||||||| ||||| | Sbjct 7832 AACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAAGTGCTCTTCGATGTGATGGAACG 7773 Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456 ||||||| |||||||| |||| ||||| ||||||||||| | | ||| | || | Sbjct 7772 CATGCTGCGCCACGTACGCAAAGCGCATGGACGGATGCTTCCACATGGTACCGGTCGTCG 7713 Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAAT 333484 |||| || ||||| | || ||| || Sbjct 7712 GCTCCACTTCGCCCGTCAACATCTTGAT 7685 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||| |||||| | || |||||||| || || || || || || Sbjct 4279 GACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTGCCGGCG 4220 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| || ||||||| ||||| |||| || ||| || | | |||| ||||| Sbjct 4219 CCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCGTTGTTG 4160 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACT 334358 || || || | ||||| || || || || || || || || |||| || ||||| || Sbjct 4159 AGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCACCCACG 4100 Query 334359 TCT 334361 ||| Sbjct 4099 TCT 4097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102868200907250