Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq41 125 8e-24 seq7 116 4e-21 seq14 114 1e-20 seq34 93.3 5e-14 seq91 87.8 2e-12 >seq41 Length=515451 Score = 125 bits (138), Expect = 8e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||||||||| || |||||| || || |||||||| ||| || || || Sbjct 381913 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 381972 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || ||||| || || || ||||| || ||||| || | || | | |||||| Sbjct 381973 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 382032 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| ||||| |||| ||| | | | || ||| | || || |||| ||||| Sbjct 382033 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGAT 382091 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| || ||||| |||||||||||||| Sbjct 382092 CGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq7 Length=1798773 Score = 116 bits (128), Expect = 4e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| | |||||| | | || | |||||||| | ||| ||||||||| || |||| Sbjct 108947 TTTAGCAACCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGT 108888 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | || || || || |||| || | |||||| ||||| || || | |||||||||| Sbjct 108887 AGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGT 108828 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTC 42152 | | || | || |||||||| || ||||| || | ||| | || || |||| Sbjct 108827 CAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAA 108769 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||||| |||| ||||||||| || ||||| | |||||| || ||||||||||| Sbjct 108768 GGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| ||||||||| || ||||| || || || || | Sbjct 108700 ACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCC 108641 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||| ||||| || || | ||||||||||| | || | || ||||| Sbjct 108640 GTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTT 108581 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| || ||||| || | ||| | | | || |||| | |||||| |||| ||||| Sbjct 108580 GTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGA 108522 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| |||||||| ||||| Sbjct 108521 TGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq14 Length=1282488 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| ||| || || || |||| || | ||||| || || || Sbjct 734866 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 734925 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | ||||||||| ||| ||||| || | ||| Sbjct 734926 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTT 734984 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || |||| | ||||||||| | |||||||||||| ||||| | |||||| || Sbjct 734985 GTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGAC 735044 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 735045 GAAGATTTGCAT 735056 >seq34 Length=561022 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | ||||| || || || || | ||||||||||| | || | || |||||||| Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| ||||| |||| ||| | | | || |||| || |||||| || | ||||||||| | Sbjct 36206 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 36148 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT-TTTCA 42213 | || || | ||||| || || || ||||| ||||| Sbjct 36147 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 36111 >seq91 Length=302683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| ||||| || | | ||| |||||| |||| |||||||||||||| | | Sbjct 181739 ATGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTA 181798 Query 57055 TACTCACCACTATACTACCGAGGATTGAATA-TATAACTTGAATA-TTGCAATTTAG 57109 |||| |||||||||||| ||||||| ||| ||||| |||| | | |||||| || Sbjct 181799 TACTGACCACTATACTAACGAGGATCATATACGATAACATGAAAAGTAGCAATTAAG 181855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207130216400