Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 145 8e-30 seq34 107 2e-18 seq7 104 2e-17 seq14 96.9 3e-15 >seq18 Length=978767 Score = 145 bits (160), Expect = 8e-30 Identities = 497/757 (66%), Gaps = 27/757 (4%) Strand=Plus/Plus Query 52093 ACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGCATCGTGA 52152 ||||||||| || |||| ||||||| |||||||||| || || ||| ||||||| | Sbjct 580490 ACGAGCGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCA 580549 Query 52153 ACATTAACCTCATCGAGTACATGCAGCG--GAACGTTCCGGAACTCGAGGCGCAATACTT 52210 || ||||| | | || | ||| ||| || | | | |||||||| || ||| Sbjct 580550 ACGAAAACCTGGCCATGAACTTT-AGCAATGAA-GTGCAAGTCCCCGAGGCGCGATGCTT 580607 Query 52211 TTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCTCATTGA 52270 |||| || ||| | |||||| | | ||| |||| ||||| || ||||| || Sbjct 580608 TTATGGGTTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGA 580667 Query 52271 GCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGC-TGCTGAATGCGTTCGAGCACGTG 52328 || | || || || | |||| ||| ||| ||||| || |||| | | Sbjct 580668 -CACATACATCAAGGACCCGACCGAGAAGGAC-CGCGTGCTGCGCGCCATCGAAACCATT 580725 Query 52329 CCGTGCGTT---CGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 |||||||| ||||| ||| | ||||| | |||||| ||| | | | |||| Sbjct 580726 CCGTGCGTCATGCGCAA---GGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCC 580782 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || ||||||||||| || || |||||| || || ||| | || || ||||| Sbjct 580783 GCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCG 580842 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || | ||||||||| | || | | || | ||||| |||||| ||||| ||| Sbjct 580843 TTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAAC 580902 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 || | || |||||||||||||| |||||| |||||||| ||| | ||| || | Sbjct 580903 GAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAG 580962 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACACG---ATCC-TGAGCATGTTCAAGGAGGCGGT 52621 | ||| | | || || ||||||||| |||| ||| || || || || || Sbjct 580963 CTCGT---CAACAAGCTG---TCGGACACGCGCATCCACGAG-ATTGTCGGCGATGCCGT 581015 Query 52622 GGCTATCGAAAAGGAGTTTTTTA-CGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACG 52680 | ||||| ||| ||||| | | || || |||| || || || | ||||||||| Sbjct 581016 TGAGATCGAGAAGCAGTTTGTGAGCGAGAGC-TTGCCCGTGGAACTCATTGGCATGAACT 581074 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGC 52740 || | ||||||||| ||||| ||||| || ||||| || | | ||| || Sbjct 581075 CGGCGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCGCTTGGCG 581134 Query 52741 AGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 || ||| ||| || || || ||||| | ||| ||| || || | | | Sbjct 581135 CCCCCAAGCTCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAG 581194 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| |||||||||||||||||||| || |||||||| Sbjct 581195 GCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 581231 >seq34 Length=561022 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| |||||||||||||||| || || || || | ||| || |||| | Sbjct 36310 GATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCA 36251 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | ||||| ||||| || || || ||||| ||||| ||| ||||| || | Sbjct 36250 AAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACG 36191 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||||| || ||||| || | ||| | || || ||||||| ||| || Sbjct 36190 TTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTG 36131 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 36130 ACGAAAATCTGCAT 36117 >seq7 Length=1798773 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || || || | | | ||||||||||| |||||||||||||| Sbjct 108712 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCT 108653 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || | || || || | | |||| | |||||| ||||| || || Sbjct 108652 GAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 108593 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| || ||||| || | | || | | ||||| | ||||| Sbjct 108592 AATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCAC 108533 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||| ||| | || || || || || || || ||||| |||||||||| Sbjct 108532 GTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGG 108483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | ||||||||||| |||||||||||||| | || || ||| || Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | || || || | | |||| | |||||| ||||| || || || ||||| ||||| Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || ||||| || | | || | | ||||| | ||||| |||| ||| | || || Sbjct 108801 ATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTT 108742 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || |||| || || || || || |||||| Sbjct 108741 CCCGTCAACGTCTTCACGAAGATTTGCATG 108712 >seq14 Length=1282488 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| |||| || || ||| || | ||| || |||| | Sbjct 734863 GATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCA 734922 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || || |||||||| || || ||||| ||||| ||| ||||| || | Sbjct 734923 AAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCACG 734982 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | | ||||| | ||||| || | ||| | ||||| || |||| || || Sbjct 734983 TTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTG 735042 Query 138601 ACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 735043 ACGAAGATTTGCATGG 735058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257220261200