Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7 114 9e-21 seq34 87.8 1e-12 >seq7 Length=1798773 Score = 114 bits (126), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || || ||||| || || ||||| |||||||| |||| Sbjct 108713 TGCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGC 108654 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | ||||||| || || |||||||| | ||||||||||| ||||| | Sbjct 108653 TGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGG 108594 Query 15068 GAATTCCTTCCTTGTCACAAA--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 |||| ||||||||||| || |||||| || || | || || | ||| | ||| Sbjct 108593 GAATGCCTTCCTTGTCTTGAATCTTTTGC--TTCACGTTGTCAATCGAGTCGGAAGGTTC 108536 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| | || ||||| || || || || || || ||||| || ||||| Sbjct 108535 CACGTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| |||||||| |||||||| | | ||||||| Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || |||||||| | ||||||||||| ||||| ||||| ||||||||||| | Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || || | || || | ||| | ||| ||||| | || ||||| | Sbjct 108801 ATCTTTTGC--TTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCT 108744 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||| || || || || |||||||| Sbjct 108743 TTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 >seq34 Length=561022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || || ||||| |||||||| ||||| | | | | ||||| ||||| ||||| Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 36254 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--ACAAATTTTGCTTT 15097 || | ||||| ||||| ||||| || || ||||||||||| | |||||| | Sbjct 36253 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGC--T 36196 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | || | || || | ||| ||| ||||| || || ||||| || || |||| || Sbjct 36195 TGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAG 36136 Query 15158 TTTTTACAAAAATTTGCATATTTGAA 15183 | || || ||||| ||||||||| || Sbjct 36135 TCTTGACGAAAATCTGCATATTTCAA 36110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357388362977975