Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq41 140 3e-28 seq34 102 8e-17 seq4 93.3 4e-14 >seq41 Length=515451 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||||||| | || ||||| || || || |||||||||| || |||||| Sbjct 381913 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 381972 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || ||||| || |||| | || |||||||| ||||| || || |||||| Sbjct 381973 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 382032 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||||||| |||| |||| | ||||| ||| || |||| || | Sbjct 382033 TCCTGGATCTTTTGCTTGACGTTG-TCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGAT 382091 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| ||||| || || ||||| || ||||| Sbjct 382092 CGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq34 Length=561022 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | ||| || || ||||| || ||||| |||| | Sbjct 36343 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 36284 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || || || ||||||| |||||||| || || || Sbjct 36283 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 36224 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| || ||||||| ||||| | | | ||| | || || Sbjct 36223 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGT-CAATCGAGTCGGACGGTTCCAC 36165 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| ||| || || ||||||||||| Sbjct 36164 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq4 Length=1887962 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 126890 CCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATC 126949 ||||| || |||| ||||| ||| | || || | ||| || ||||| ||| ||| | Sbjct 1183528 CCGCGCAACCGCAGCACCAGATGCAGGGTCGAGTGGGATTGGATGTTGTAGTCGGCCAAC 1183587 Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 || || ||| || |||||||||||||| | ||||| |||||||| || || ||||| Sbjct 1183588 GTCCGGTCATCTTCGAGCTGTTTTCCAGCAAAAATCAAGCGCTGCTGGTCTGGCGGTATA 1183647 Query 127010 CCCTCCTTGTC 127020 ||||||||||| Sbjct 1183648 CCCTCCTTGTC 1183658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495836960400