Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 136 4e-27 seq7 113 4e-20 seq34 111 1e-19 seq14 86.0 6e-12 >seq2 Length=2059303 Score = 136 bits (150), Expect = 4e-27 Identities = 476/724 (66%), Gaps = 28/724 (4%) Strand=Plus/Minus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 |||||||||||||| |||||||||||||| ||||| || || |||||| | || |||| Sbjct 917615 CAAGTCGAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAAC 917556 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGT--AATCTTTGCTCCGAAATTATCGAATACA 123717 ||| ||| |||| || || || || || || | |||| ||| || ||||| |||| Sbjct 917555 CAGCAGAACCTGGGCACGATCAA--GTCGTCCAACTTGTGCTGCGAGATCATCGAGTACA 917498 Query 123718 GCGATGC--CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TG---AATCGTT 123771 ||| || || ||||||||||||| || ||||| || | | ||| || || ||| Sbjct 917497 -CGA-GCAAGGACGAAGTGGCCGTGTGCAACTTGGCGTCCA-TCGCGCTGTCCAA--GTT 917443 Query 123772 GCGTCGAAAACGGCG-CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTA 123830 ||||| |||| | ||| | ||| || || || | | || | || || || Sbjct 917442 -TGTCGAGAACGCTGTGTTTGACTTTGCACACCTGCACAAG-ATCGCCAA---GGTGGTC 917388 Query 123831 AAG---AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTG 123887 | | || | ||||| | ||||| || || | ||| || | | |||||||| Sbjct 917387 ACGACCAACCTCAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAAC 917328 Query 123888 TCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTA 123947 || || ||| | ||| |||| | ||| | ||||| | ||||||||||| | Sbjct 917327 AGCAACATGCGCCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATC 917268 Query 123948 ATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAA 124007 | || | ||| ||| | ||||| ||| |||| || ||| || ||| Sbjct 917267 CTCATGGGGTACTCGTTCGAGTCGGTGGAAGCCAAGGTGCTGAACCAGCAGATCTTTGAA 917208 Query 124008 ACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTAC 124067 || || || ||| ||| |||| || | ||||| || || | || || ||||| Sbjct 917207 ACCATCTACCACGCCGCCATGGAAACGTCCATGGAACTCGCCAAGAGCCAAGGGCCGTAC 917148 Query 124068 GAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCT 124127 || | |||| |||| ||| | ||| | || | || ||||||||| ||||| | Sbjct 917147 GAGACCTACGAGGGCTCCCCCGTGAGTCAGGGCAAGTTCCAGTACGACTTGTGGGGCGTC 917088 Query 124128 ACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGAC--GCACGGTT 124185 || ||| | || ||||||||||| |||| || |||| | | | |||||| Sbjct 917087 ACGCCGTCGGATCTGTGGGACTGG-GCGTCGCTCAA-GGCGCAAGTGGCCCAGCACGGCA 917030 Query 124186 TGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAA 124245 | || ||||||||| | |||| |||||| ||||| |||| || || || | || | Sbjct 917029 TCCGCAACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTCGGCA 916970 Query 124246 ACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG 124305 |||||||||| |||||||||| || ||| ||||| || || || | || |||| Sbjct 916969 ACAACGAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCGGGCG 916910 Query 124306 ATTT 124309 | || Sbjct 916909 AATT 916906 >seq7 Length=1798773 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||||||| || || ||||| || Sbjct 108687 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 108628 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || |||||||| || ||||||||||| || |||||||| ||| Sbjct 108627 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 108568 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || | || | || | | |||||||| || || ||||| || | || |||||||| Sbjct 108567 TGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTGCCGGT 108509 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 108508 GAGGGTCTTGACAAAGATCTGCAT 108485 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | || | ||| || || || ||||||||||| || || |||||| Sbjct 108939 CCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108880 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || ||||| || || || || | ||||| || |||||||| || ||| Sbjct 108879 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108820 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || |||||||| ||||| || | || | || | | |||||||| || || Sbjct 108819 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCAC 108761 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || || | || || || || |||||||| Sbjct 108760 GTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 >seq34 Length=561022 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| | |||| ||| |||||||||||||| || || ||||| Sbjct 36343 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 36284 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||||||| || || || | ||||| || |||||||| ||||| Sbjct 36283 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 36224 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || ||||| || ||||| |||| || | || | | |||||| | || || Sbjct 36223 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCAC 36165 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || | || || || || | ||| || || ||||| ||||| Sbjct 36164 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq14 Length=1282488 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || |||| ||| |||||||||||||| || || || || | || || || Sbjct 734847 CACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTC 734906 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||| || || || | || | |||||||||||||| ||||| ||||| || || || Sbjct 734907 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTG 734966 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||||| || | || | || | | |||||| | || || || | || | |||| Sbjct 734967 GATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTT 735025 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | || || || || |||||||| Sbjct 735026 TCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998482216600