Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq18 134 2e-26 seq10 84.2 3e-11 >seq2 Length=2059303 Score = 154 bits (170), Expect = 2e-32 Identities = 454/681 (67%), Gaps = 18/681 (3%) Strand=Plus/Plus Query 203842 GTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGT 203901 |||||||||||||||||| |||| | || | | || |||||||| ||||| Sbjct 916548 GTCCACCGTGAACTGAATCGCGTCAGCTTTGGGGCGCGAGCGGAGGTAGTACATACCGGT 916607 Query 203902 CTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTC 203961 ||| | ||| || |||| | || | ||||||||| | || || || | | | ||||| Sbjct 916608 CTTCAAGCCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGCTTACTGATGCTTGGGTC 916667 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 ||| ||||| | ||||| ||||||||| |||||| | | || || ||||||| Sbjct 916668 GGCGATGTGCACGTTCATGCTTTGGCTTTGGCAGATGAACGCACCGCGGTCGGCGGCCAA 916727 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTG 204081 | || | | ||| ||| ||||||||||| |||||| |||| || || || | | Sbjct 916728 GTCGAGCACGACCTTTTGCTTGATCTCCCACACAGTCTTGTACACTTCCTTGACGT-TCG 916786 Query 204082 AGGCACATCTTCCC-ACGTCCTGATCGA-GCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 || || | | |||| ||| || |||| ||| || | ||| | | | Sbjct 916787 CGGGG-ATGGACGCGACGTTTTGAACGCTGCCGCGGTCATGCAAGA-TCTGGTTGCGGAC 916844 Query 204140 TCCTCCCC-CCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | | ||||| |||| | |||||||||| || || || ||| | ||| Sbjct 916845 GTCGCTGTTCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGT 916904 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | ||| || ||| |||| || || || |||| | || Sbjct 916905 GAATTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTC 916964 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||||||||| ||||| |||||| |||||||||||||| |||| |||||| ||||| Sbjct 916965 GTTGTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTT 917024 Query 204319 GCGCACACCGTATTTTTGGAC-CCTGCG-CTTCAGAGAGGTCCAGTCGTGC--ATCGCAC 204374 ||| | ||| | | || | | |||| ||| || || | |||||| | ||| || Sbjct 917025 GCGGATGCCG--TGCTGGGCCACTTGCGCCTTGAGCGACGCCCAGTCCCACAGATCCGAC 917082 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGT 204434 || | |||||||||| |||| |||| || |||| ||||| || ||| ||||| || Sbjct 917083 --GGCGTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGT 917140 Query 204435 ACGTCGGATAAGGCTGAT-CCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTGATA 204492 | ||| || ||| | ||||| || || || || || | |||||||| | Sbjct 917141 AGGTCTCGTACGGCCCTTGGCTCTT-GGCGAG-TTCCATGGACGTTTCCATGGCGGCGTG 917198 Query 204493 GTACATGGTCTCAAAGATCTG 204513 ||| ||||| ||||||||||| Sbjct 917199 GTAGATGGTTTCAAAGATCTG 917219 >seq18 Length=978767 Score = 134 bits (148), Expect = 2e-26 Identities = 306/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| ||||||||||||||||| || ||||| || ||||||| ||||| || | || Sbjct 580947 GCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAG 580888 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAA 160040 ||||||||||| ||| ||| ||||||||||| |||| ||| || | |||| || | Sbjct 580887 GCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGG-AGCAGAACGAACCGGAGAAGA 580829 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG---TTGGTGT 160097 |||| || |||||||| || ||||| |||| | ||| | | | |||| ||| ||| Sbjct 580828 AGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGT 580769 Query 160098 CATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGG 160157 | | |||| | ||||| | ||||| || |||||| ||| |||| || Sbjct 580768 C---GCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGG 580712 Query 160158 CGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGT 160217 || | || | ||||| ||| || |||||||| || | || || ||||| Sbjct 580711 CGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCGAGT 580652 Query 160218 ACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA 160277 ||| ||| | ||| | ||||||||||| || || || || || || |||||| Sbjct 580651 ACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCTCGG 580592 Query 160278 GATACTGCACCTCCTGTGTGAACCTT--TGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 | ||||| || | || || || || |||| || | || || | |||||| Sbjct 580591 GGACTTGCACTTCAT-TGCTAAAGTTCATG-GCCAGGTTTTCGTTGACGATGCCGTCGCT 580534 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAA 160368 || |||||||| |||| |||||| | |||||| Sbjct 580533 CGCAGCAAAGAACGCCAGCACGTGCGTGATGAA 580501 >seq10 Length=1517454 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 116117 TGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCGAGCTACGCGCTACTGACTCATAT 116176 ||| ||||||||| | ||||| ||||| || |||| ||||||||||| ||||| | | | Sbjct 194041 TGCCGACATGGGGCTCGGCGTGCCCTTCAATATTGCCAGCTACGCGCTGCTGACCCGTCT 194100 Query 116177 TATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTGATACACTCTATTGGGGACGCGCA 116236 | || || || | || ||| || || || || ||| |||| |||||||| Sbjct 194101 CCTCGCCCAAGTGTGTGGGCTCCAAGCTGGCGACTTCATTCACGTGTTTGGCGACGCGCA 194160 Query 116237 CATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAGGTGAAGCGG 116282 ||||| ||||||||||||| ||| || |||| | |||||| Sbjct 194161 TGTCTACTTGAACCATGTGGCGCCCCTCCAGGAGCAGCTCAAGCGG 194206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146900567600